Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGY88_RS13070 Genome accession   NZ_CP066721
Coordinates   2716013..2716543 (-) Length   176 a.a.
NCBI ID   WP_225486643.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2711013..2721543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS13070 (JGY88_13000) ssbA 2716013..2716543 (-) 531 WP_225486643.1 single-stranded DNA-binding protein Machinery gene
  JGY88_RS13075 (JGY88_13005) rpsF 2716562..2716867 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  JGY88_RS13080 (JGY88_13010) - 2717296..2718102 (+) 807 WP_101105239.1 GH25 family lysozyme -
  JGY88_RS13085 (JGY88_13015) ychF 2718252..2719349 (-) 1098 WP_107539256.1 redox-regulated ATPase YchF -
  JGY88_RS13090 (JGY88_13020) - 2719349..2719564 (-) 216 WP_017723390.1 DUF951 domain-containing protein -
  JGY88_RS13095 (JGY88_13025) - 2719586..2720470 (-) 885 WP_042363432.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19646.10 Da        Isoelectric Point: 4.9056

>NTDB_id=522155 JGY88_RS13070 WP_225486643.1 2716013..2716543(-) (ssbA) [Staphylococcus xylosus strain 2.1523]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNNNNNNTSNNNQSDNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=522155 JGY88_RS13070 WP_225486643.1 2716013..2716543(-) (ssbA) [Staphylococcus xylosus strain 2.1523]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGTGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAATAATAACAACAACAACAACAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTT
GCAAATGCAAACGGACCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.798

100

0.625
  ssb Latilactobacillus sakei subsp. sakei 23K

56.667

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

62.5

0.369
  ssb Glaesserella parasuis strain SC1401

33.862

100

0.364