Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JGY87_RS06430 Genome accession   NZ_CP066719
Coordinates   1343690..1346077 (+) Length   795 a.a.
NCBI ID   WP_038678681.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1602     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338690..1351077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY87_RS06410 (JGY87_06360) sal 1338935..1340566 (+) 1632 WP_029377125.1 Sal family ABC-F type ribosomal protection protein -
  JGY87_RS06415 (JGY87_06365) - 1340627..1341772 (+) 1146 WP_029377126.1 cysteine desulfurase family protein -
  JGY87_RS06420 (JGY87_06370) mnmA 1341773..1342885 (+) 1113 WP_029377127.1 tRNA 2-thiouridine(34) synthase MnmA -
  JGY87_RS06425 (JGY87_06375) - 1343018..1343686 (+) 669 WP_029377128.1 tetratricopeptide repeat protein -
  JGY87_RS06430 (JGY87_06380) recD2 1343690..1346077 (+) 2388 WP_038678681.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JGY87_RS06435 (JGY87_06385) alaS 1346426..1349056 (+) 2631 WP_058625555.1 alanine--tRNA ligase -
  JGY87_RS06440 (JGY87_06390) - 1349125..1349385 (+) 261 WP_225489596.1 IreB family regulatory phosphoprotein -
  JGY87_RS06445 (JGY87_06395) ruvX 1349389..1349817 (+) 429 WP_029377132.1 Holliday junction resolvase RuvX -
  JGY87_RS06450 (JGY87_06400) - 1349834..1350166 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.10 Da        Isoelectric Point: 4.5117

>NTDB_id=522107 JGY87_RS06430 WP_038678681.1 1343690..1346077(+) (recD2) [Staphylococcus xylosus strain TMW 2.1602]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=522107 JGY87_RS06430 WP_038678681.1 1343690..1346077(+) (recD2) [Staphylococcus xylosus strain TMW 2.1602]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGAAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTGCCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTTAACGT
AGTTGAAAAAAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAGTGTATAAAACAAGGT
CATACGTATTTACCTACTAATAATGTACTAGAGATGACCCAAGATATGCTATCACAACCACCAGGTGAATTAATAGAAAC
TCAGCAGCTTGAGCAAGTTTTACAAGATTTAGTCAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATCCCAA
GTTTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATCTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATTAAGAAACTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATTCATAAGTCACAAGGATCAGAATTTCCAATTGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGATCCGCAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACGCAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501