Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ10_RS11900 Genome accession   NZ_CP066708
Coordinates   2520437..2520943 (-) Length   168 a.a.
NCBI ID   WP_019166018.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2515437..2525943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ10_RS11875 (JGZ10_11875) - 2515943..2516770 (-) 828 WP_101485005.1 carbohydrate ABC transporter permease -
  JGZ10_RS11880 (JGZ10_11880) - 2516772..2517671 (-) 900 WP_110144927.1 sugar ABC transporter permease -
  JGZ10_RS11885 (JGZ10_11885) - 2517681..2519006 (-) 1326 WP_187530782.1 sugar ABC transporter substrate-binding protein -
  JGZ10_RS11890 (JGZ10_11890) - 2519110..2519940 (-) 831 WP_181397711.1 AraC family transcriptional regulator -
  JGZ10_RS11895 (JGZ10_11895) rpsR 2520141..2520383 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ10_RS11900 (JGZ10_11900) ssbA 2520437..2520943 (-) 507 WP_019166018.1 single-stranded DNA-binding protein Machinery gene
  JGZ10_RS11905 (JGZ10_11905) rpsF 2520966..2521262 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ10_RS11910 (JGZ10_11910) sbi 2521599..2523089 (+) 1491 WP_187530781.1 Ig-binding surface protein Sbi/SpsK -
  JGZ10_RS11915 (JGZ10_11915) - 2523143..2523952 (-) 810 WP_187530780.1 ABC transporter permease subunit -
  JGZ10_RS11920 (JGZ10_11920) - 2523945..2524880 (-) 936 WP_187530779.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18724.39 Da        Isoelectric Point: 5.1957

>NTDB_id=521786 JGZ10_RS11900 WP_019166018.1 2520437..2520943(-) (ssbA) [Staphylococcus pseudintermedius strain HSP125]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNNHQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=521786 JGZ10_RS11900 WP_019166018.1 2520437..2520943(-) (ssbA) [Staphylococcus pseudintermedius strain HSP125]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATAATCATCAACCCGCTAACGATAACCCATTTGCGAATGCGAACGGCCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.363