Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I8G32_RS14470 Genome accession   NZ_CP066699
Coordinates   3176870..3177373 (-) Length   167 a.a.
NCBI ID   WP_011158365.1    Uniprot ID   Q6N604
Organism   Rhodopseudomonas palustris strain RCB100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3171870..3182373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8G32_RS14445 (I8G32_02894) - 3171994..3173286 (-) 1293 WP_011158360.1 serine hydrolase domain-containing protein -
  I8G32_RS14450 (I8G32_02895) queC 3173368..3174081 (-) 714 WP_011158361.1 7-cyano-7-deazaguanine synthase QueC -
  I8G32_RS14455 mazG 3174198..3175022 (+) 825 WP_011158362.1 nucleoside triphosphate pyrophosphohydrolase -
  I8G32_RS14460 (I8G32_02897) - 3175101..3176396 (+) 1296 WP_011158363.1 hemolysin family protein -
  I8G32_RS14465 (I8G32_02898) - 3176393..3176755 (+) 363 WP_011158364.1 hypothetical protein -
  I8G32_RS14470 (I8G32_02899) ssb 3176870..3177373 (-) 504 WP_011158365.1 single-stranded DNA-binding protein Machinery gene
  I8G32_RS14475 (I8G32_02900) - 3177910..3178668 (+) 759 WP_042441114.1 outer membrane protein -
  I8G32_RS14480 (I8G32_02901) uvrA 3178975..3181992 (+) 3018 WP_011158367.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17827.64 Da        Isoelectric Point: 6.9869

>NTDB_id=521621 I8G32_RS14470 WP_011158365.1 3176870..3177373(-) (ssb) [Rhodopseudomonas palustris strain RCB100]
MAGSVNKVILVGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIFNEGLCKVAEQYLRKGAKVYI
EGQLQTRKWTDQSGAERYSTEVVLQNFNSNLTMLDGRSGGGGGGGYGDDNSGGDFGSSGPSGGGGARRPMPASSGGGRSD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=521621 I8G32_RS14470 WP_011158365.1 3176870..3177373(-) (ssb) [Rhodopseudomonas palustris strain RCB100]
ATGGCGGGTAGCGTGAACAAGGTGATCCTGGTCGGGAATCTCGGTGCCGATCCGGAGATCAAGCGGACCCAGGACGGGCG
TCCGATTGCGAACCTGCGGATCGCCACCTCGGAGTCCTGGCGCGATCGCGCCACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCAATGAGGGATTGTGCAAGGTCGCCGAGCAGTACCTGAGAAAAGGCGCGAAGGTTTACATC
GAAGGCCAGCTGCAGACACGCAAATGGACCGATCAGAGCGGCGCTGAGCGCTACAGCACCGAGGTGGTGCTGCAGAACTT
CAACTCGAATCTGACCATGCTCGACGGCCGCAGCGGCGGCGGAGGTGGCGGCGGCTATGGCGACGACAACTCCGGCGGCG
ATTTCGGCTCCAGCGGCCCCTCGGGTGGCGGCGGCGCACGGCGGCCGATGCCTGCCAGCAGCGGCGGCGGTCGCAGCGAT
ATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6N604

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

100

0.557
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.539
  ssb Neisseria meningitidis MC58

37.43

100

0.401
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.401