Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPV_RS02060 Genome accession   NC_018140
Coordinates   450663..451142 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 445663..456142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS02025 (LPV_0441) rplO 445795..446229 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LPV_RS02030 (LPV_0442) secY 446232..447560 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  LPV_RS15690 (LPV_CDS447576D) rpmJ 447577..447690 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LPV_RS02035 (LPV_0443) rpsM 447768..448124 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LPV_RS02040 (LPV_0445) rpsK 448148..448546 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LPV_RS02045 (LPV_0446) rpsD 448563..449183 (+) 621 WP_014843282.1 30S ribosomal protein S4 -
  LPV_RS02050 (LPV_0447) - 449202..450194 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  LPV_RS02055 (LPV_0448) rplQ 450213..450596 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  LPV_RS02060 (LPV_0449) ssb 450663..451142 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  LPV_RS02065 (LPV_0450) - 451226..452593 (-) 1368 WP_014843283.1 MFS transporter -
  LPV_RS02070 (LPV_0452) fabL 452755..453513 (+) 759 WP_014843284.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LPV_RS02075 (LPV_0453) - 453584..453997 (+) 414 WP_010946108.1 acyl carrier protein -
  LPV_RS02080 (LPV_0454) - 453997..454893 (+) 897 WP_014843285.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=52154 LPV_RS02060 WP_011213016.1 450663..451142(-) (ssb) [Legionella pneumophila subsp. pneumophila]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=52154 LPV_RS02060 WP_011213016.1 450663..451142(-) (ssb) [Legionella pneumophila subsp. pneumophila]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGTAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATACA
AATGCTCGACAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment