Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFL57_RS03395 Genome accession   NZ_CP066565
Coordinates   745389..745853 (-) Length   154 a.a.
NCBI ID   WP_135026450.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740389..750853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL57_RS03365 (JFL57_03365) focA 740800..741651 (-) 852 WP_075293712.1 formate transporter FocA -
  JFL57_RS03370 (JFL57_03370) hinT 741896..742246 (+) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  JFL57_RS03375 (JFL57_03375) - 742246..742602 (+) 357 WP_075293714.1 YcfL family protein -
  JFL57_RS03380 (JFL57_03380) nagZ 742609..743664 (+) 1056 WP_075293715.1 beta-N-acetylhexosaminidase -
  JFL57_RS03385 (JFL57_03385) - 743684..744202 (+) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  JFL57_RS03390 (JFL57_03390) metF 744418..745302 (+) 885 WP_075293716.1 methylenetetrahydrofolate reductase -
  JFL57_RS03395 (JFL57_03395) ssb 745389..745853 (-) 465 WP_135026450.1 single-stranded DNA-binding protein Machinery gene
  JFL57_RS03400 (JFL57_03400) uvrA 746032..748863 (+) 2832 WP_075293717.1 excinuclease ABC subunit UvrA -
  JFL57_RS03405 (JFL57_03405) - 749035..750090 (+) 1056 WP_011609282.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17409.30 Da        Isoelectric Point: 5.7904

>NTDB_id=520973 JFL57_RS03395 WP_135026450.1 745389..745853(-) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-076]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYESQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=520973 JFL57_RS03395 WP_135026450.1 745389..745853(-) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAATCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.74
  ssb Vibrio cholerae strain A1552

52.601

100

0.591
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5