Detailed information NTG0520834

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: JFL49_RS06560
• Genome accession: NZ_CP066558
• Coordinates: 1417580..1418713 (+)
• Length: 377 a.a.
• NCBI ID: WP_012340255.1
• Uniprot ID: A0A9Q6YYH7
• Organism: Histophilus somni strain ASc-MMNZ-VFA-070
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1412580..1423713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL49_RS06540 (JFL49_06540)	-	1413070..1415610 (-)	2541	WP_075293729.1	penicillin-binding protein 1A	-
JFL49_RS06545 (JFL49_06545)	-	1415735..1416520 (+)	786	WP_012340257.1	hypothetical protein	-
JFL49_RS06550 (JFL49_06550)	-	1416524..1417063 (+)	540	WP_012340256.1	PilN domain-containing protein	-
JFL49_RS06555 (JFL49_06555)	-	1417067..1417564 (+)	498	WP_011609266.1	hypothetical protein	-
JFL49_RS06560 (JFL49_06560)	comE	1417580..1418713 (+)	1134	WP_012340255.1	type IV pilus secretin PilQ	Machinery gene
JFL49_RS06565 (JFL49_06565)	aroK	1418895..1419422 (+)	528	WP_012340254.1	shikimate kinase AroK	-
JFL49_RS06570 (JFL49_06570)	aroB	1419442..1420530 (+)	1089	WP_075293728.1	3-dehydroquinate synthase	-
JFL49_RS06575 (JFL49_06575)	-	1420537..1421400 (+)	864	WP_075293727.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
JFL49_RS06580 (JFL49_06580)	galU	1421448..1422335 (-)	888	WP_075293726.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 42360.38 Da
• Isoelectric Point: 6.4072

>NTDB_id=520834 JFL49_RS06560 WP_012340255.1 1417580..1418713(+) (comE) [Histophilus somni strain ASc-MMNZ-VFA-070]
MLIKNFLYFFLFLFTVSVELSARDPFDKRQRSIKKETNIQLDTKENLSKSTNEPNLTTTSIKLHYAKAADVMKSLTTGQG
SWLSSNGTFSFDERSNLLLIQDNQETLNALKKLIKEMDQPIEQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGN
LAANGFQHLTEQLNVNFATTATPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVI
TGKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEINTQVFAQDGETIVLGGVFH
DTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTPRIIRSEQPNEIIKPLK

Nucleotide

• Length: 1134 bp

>NTDB_id=520834 JFL49_RS06560 WP_012340255.1 1417580..1418713(+) (comE) [Histophilus somni strain ASc-MMNZ-VFA-070]
ATGTTAATTAAAAATTTCTTATATTTCTTTTTGTTCTTATTCACAGTAAGTGTGGAATTATCTGCTAGAGATCCCTTTGA
TAAAAGACAAAGAAGCATAAAAAAAGAGACAAATATACAATTAGATACAAAGGAAAATTTGTCAAAATCGACTAATGAGC
CAAATTTAACGACGACTTCGATCAAATTACATTATGCTAAAGCGGCTGATGTAATGAAATCACTGACTACAGGTCAAGGT
TCATGGCTTTCATCAAATGGAACTTTTAGTTTTGATGAACGAAGTAACTTGCTCTTAATTCAGGATAATCAGGAAACTCT
CAATGCCTTAAAAAAATTAATCAAAGAAATGGATCAACCTATTGAACAAATTGCAATTGAAGCGAGAATTGTAACAATTA
GCGATGAAAATTTAAAAGAATTGGGGGTTCGTTGGGGAATTTTTGAGCCTACAAATAACGCTCATCATCTTTCAGGCAAT
CTAGCAGCAAACGGATTTCAGCATTTAACGGAACAACTTAACGTCAATTTTGCTACTACCGCAACACCTGCAGGTTCTAT
TGCTTTACAAATTGCCAAAATTAATGATCGACTTTTAGACTTAGAACTTACCGCACTTGAACGAGAAAATAATGTAGAAA
TTATTGCAAGCCCTCGTTTACTTACAACGAATAAGCAAAGTGCAAGTATTAAACAAGGAACTGAAATTCCTTATGTTATT
ACCGGCAAGAAATCTGATGAACAGAAAGTAGAGTTTAGAGAAGCAGTTTTAGGATTAGAAGTAACGCCACACATTTCTAA
AGACAATACTATTTTACTGGATCTCATTGTAAGCCAAAACTCCCCTGGAAGTCGTATTACTTATGGGCAAAATGAAATGG
TATCTATTGATAAACAAGAAATTAATACTCAAGTTTTTGCACAAGATGGGGAAACGATTGTGTTGGGTGGCGTATTTCAC
GATACAATCACAAAAGGAGTAGATAAAGTACCGCTGTTAGGAGACATACCTATATTAAAAAGACTGTTCAGCCGTGAAAG
TGAAAGACACCAAAAACGTGAATTAGTCATTTTTGTTACCCCAAGGATCATTCGTTCAGAACAACCTAATGAAATAATAA
AACCATTAAAATAG

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (60-123)

• Bacterial type II and III secretion system protein (Secretin) (205-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae 86-028NP	74.769	86.207	0.645
comE	Haemophilus influenzae Rd KW20	74.462	86.207	0.642
comE	Glaesserella parasuis strain SC1401	61.587	83.554	0.515
pilQ	Vibrio campbellii strain DS40M4	44.932	96.817	0.435
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	47.205	85.411	0.403
pilQ	Vibrio cholerae strain A1552	47.205	85.411	0.403