Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   JEQ22_RS01955 Genome accession   NZ_CP066501
Coordinates   391106..391225 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain ID-A02     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 386106..396225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ22_RS01940 (JEQ22_01925) - 387718..388401 (+) 684 WP_014416901.1 response regulator transcription factor -
  JEQ22_RS01945 (JEQ22_01930) - 388388..389821 (+) 1434 WP_237586938.1 HAMP domain-containing sensor histidine kinase -
  JEQ22_RS01950 (JEQ22_01935) rapC 389974..391122 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  JEQ22_RS01955 (JEQ22_01940) phrC 391106..391225 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  JEQ22_RS01960 (JEQ22_01945) - 391375..391470 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  JEQ22_RS01965 (JEQ22_01950) - 391565..392929 (-) 1365 WP_025649998.1 aspartate kinase -
  JEQ22_RS01970 (JEQ22_01955) ceuB 393343..394296 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  JEQ22_RS01975 (JEQ22_01960) - 394286..395233 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  JEQ22_RS01980 (JEQ22_01965) - 395227..395985 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=520500 JEQ22_RS01955 WP_003156334.1 391106..391225(+) (phrC) [Bacillus velezensis strain ID-A02]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=520500 JEQ22_RS01955 WP_003156334.1 391106..391225(+) (phrC) [Bacillus velezensis strain ID-A02]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718