Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JF380_RS01605 | Genome accession | NZ_CP066492 |
| Coordinates | 362456..362959 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain nan_175_F371_ch | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 362456..383729 | 362456..362959 | within | 0 |
Gene organization within MGE regions
Location: 362456..383729
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JF380_RS01605 (JF380_01605) | ssbA | 362456..362959 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JF380_RS01610 (JF380_01610) | rpsR | 363011..363253 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JF380_RS01615 (JF380_01615) | - | 363447..364454 (-) | 1008 | WP_198914160.1 | Abi family protein | - |
| JF380_RS01620 (JF380_01620) | - | 364459..365673 (-) | 1215 | WP_198914161.1 | tyrosine-type recombinase/integrase | - |
| JF380_RS01625 (JF380_01625) | - | 366126..366824 (-) | 699 | WP_198914162.1 | helix-turn-helix domain-containing protein | - |
| JF380_RS01630 (JF380_01630) | - | 366968..367180 (+) | 213 | WP_198914163.1 | helix-turn-helix domain-containing protein | - |
| JF380_RS01635 (JF380_01635) | - | 367181..367453 (+) | 273 | WP_198914164.1 | helix-turn-helix domain-containing protein | - |
| JF380_RS01640 (JF380_01640) | - | 367465..367620 (+) | 156 | WP_198914165.1 | pathogenicity island protein | - |
| JF380_RS01645 (JF380_01645) | - | 367605..367850 (+) | 246 | WP_001171847.1 | hypothetical protein | - |
| JF380_RS01650 (JF380_01650) | - | 367810..368193 (+) | 384 | WP_198914166.1 | pathogenicity island protein | - |
| JF380_RS01655 (JF380_01655) | tscT | 368194..368493 (+) | 300 | WP_198914167.1 | type II toxin-antitoxin system toxin TscT | - |
| JF380_RS01660 (JF380_01660) | - | 368580..369449 (+) | 870 | WP_198914168.1 | primase alpha helix C-terminal domain-containing protein | - |
| JF380_RS01665 (JF380_01665) | - | 369461..370831 (+) | 1371 | WP_198914169.1 | DNA primase family protein | - |
| JF380_RS01670 (JF380_01670) | - | 371074..371436 (+) | 363 | WP_198914170.1 | pathogenicity island protein | - |
| JF380_RS01675 (JF380_01675) | - | 371424..371696 (+) | 273 | WP_233144383.1 | hypothetical protein | - |
| JF380_RS01680 (JF380_01680) | - | 371698..372339 (+) | 642 | WP_198914172.1 | pathogenicity island protein | - |
| JF380_RS01685 (JF380_01685) | - | 372690..373031 (+) | 342 | WP_198914173.1 | pathogenicity island protein | - |
| JF380_RS01690 (JF380_01690) | - | 373043..373621 (+) | 579 | WP_198914174.1 | pathogenicity island protein | - |
| JF380_RS01695 (JF380_01695) | - | 373639..373857 (+) | 219 | WP_198914175.1 | capsid morphogenesis B protein | - |
| JF380_RS01700 (JF380_01700) | - | 373908..374435 (+) | 528 | WP_198914176.1 | spore coat protein | - |
| JF380_RS01705 (JF380_01705) | - | 374567..374779 (+) | 213 | WP_198914267.1 | helix-turn-helix domain-containing protein | - |
| JF380_RS01710 (JF380_01710) | - | 374776..375345 (+) | 570 | WP_198914177.1 | terminase small subunit | - |
| JF380_RS01715 (JF380_01715) | - | 375695..375865 (+) | 171 | WP_198914178.1 | VraH family peptide resistance protein | - |
| JF380_RS14245 | - | 376299..376415 (+) | 117 | Protein_346 | hypothetical protein | - |
| JF380_RS01720 (JF380_01720) | - | 376740..377255 (+) | 516 | WP_123097623.1 | hypothetical protein | - |
| JF380_RS01725 (JF380_01725) | spn | 377943..378233 (+) | 291 | WP_199012918.1 | SPIN family peroxidase inhibitor | - |
| JF380_RS01730 (JF380_01730) | - | 378785..379723 (-) | 939 | WP_072419886.1 | Abi family protein | - |
| JF380_RS01735 (JF380_01735) | - | 379774..380476 (-) | 703 | Protein_350 | tyrosine-type recombinase/integrase | - |
| JF380_RS01740 (JF380_01740) | - | 380682..381293 (+) | 612 | WP_000473942.1 | exotoxin beta-grasp domain-containing protein | - |
| JF380_RS01745 (JF380_01745) | - | 381662..382034 (+) | 373 | Protein_352 | YxeA family protein | - |
| JF380_RS01750 (JF380_01750) | - | 382211..382783 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JF380_RS01755 (JF380_01755) | - | 382921..383184 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| JF380_RS01760 (JF380_01760) | - | 383478..383729 (+) | 252 | WP_000466739.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=520449 JF380_RS01605 WP_000934799.1 362456..362959(+) (ssbA) [Staphylococcus aureus strain nan_175_F371_ch]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=520449 JF380_RS01605 WP_000934799.1 362456..362959(+) (ssbA) [Staphylococcus aureus strain nan_175_F371_ch]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |