Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SMUGS5_RS05140 Genome accession   NC_018089
Coordinates   1069985..1070674 (-) Length   229 a.a.
NCBI ID   WP_002272187.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064985..1075674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS05110 (SMUGS5_05065) - 1065236..1065994 (-) 759 WP_002266790.1 inositol monophosphatase family protein -
  SMUGS5_RS05115 (SMUGS5_05070) - 1065984..1066262 (-) 279 WP_002266791.1 UPF0223 family protein -
  SMUGS5_RS05120 (SMUGS5_05075) spx 1066255..1066668 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  SMUGS5_RS05125 (SMUGS5_05080) - 1066729..1067649 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  SMUGS5_RS05130 (SMUGS5_05085) truB 1067680..1068560 (-) 881 Protein_1000 tRNA pseudouridine(55) synthase TruB -
  SMUGS5_RS05135 (SMUGS5_05090) scnK 1068677..1069984 (-) 1308 WP_014834981.1 sensor histidine kinase Regulator
  SMUGS5_RS05140 (SMUGS5_05095) scnR 1069985..1070674 (-) 690 WP_002272187.1 response regulator transcription factor Regulator
  SMUGS5_RS05145 (SMUGS5_05100) - 1070849..1071757 (+) 909 WP_002293311.1 ABC transporter ATP-binding protein -
  SMUGS5_RS05150 (SMUGS5_05105) - 1071757..1072497 (+) 741 WP_014834982.1 ABC transporter permease -
  SMUGS5_RS05155 (SMUGS5_05110) - 1072494..1073222 (+) 729 WP_002279688.1 ABC transporter permease -
  SMUGS5_RS05160 (SMUGS5_05115) - 1073350..1074714 (-) 1365 WP_002279689.1 DUF438 domain-containing protein -
  SMUGS5_RS05165 (SMUGS5_05120) - 1074714..1074947 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26261.61 Da        Isoelectric Point: 6.9650

>NTDB_id=52035 SMUGS5_RS05140 WP_002272187.1 1069985..1070674(-) (scnR) [Streptococcus mutans GS-5]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=52035 SMUGS5_RS05140 WP_002272187.1 1069985..1070674(-) (scnR) [Streptococcus mutans GS-5]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.563

100

0.996
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment