Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   YB51_RS02400 Genome accession   NC_022516
Coordinates   453787..454452 (+) Length   221 a.a.
NCBI ID   WP_004194119.1    Uniprot ID   A0A0H3MTI6
Organism   Streptococcus suis YB51     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448787..459452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS02380 (YB51_2260) - 449875..450108 (+) 234 WP_022540567.1 hypothetical protein -
  YB51_RS02385 (YB51_2270) - 450809..451033 (-) 225 Protein_430 DUF1492 domain-containing protein -
  YB51_RS02390 (YB51_2275) - 451813..452445 (-) 633 WP_004194123.1 YigZ family protein -
  YB51_RS02395 (YB51_2280) comFA/cflA 452502..453794 (+) 1293 WP_004194121.1 DEAD/DEAH box helicase Machinery gene
  YB51_RS02400 (YB51_2285) comFC/cflB 453787..454452 (+) 666 WP_004194119.1 ComF family protein Machinery gene
  YB51_RS02405 (YB51_2290) hpf 454529..455071 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25748.55 Da        Isoelectric Point: 8.2726

>NTDB_id=52000 YB51_RS02400 WP_004194119.1 453787..454452(+) (comFC/cflB) [Streptococcus suis YB51]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=52000 YB51_RS02400 WP_004194119.1 453787..454452(+) (comFC/cflB) [Streptococcus suis YB51]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment