Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JFX10_RS15595 Genome accession   NZ_CP066359
Coordinates   1657430..1657954 (+) Length   174 a.a.
NCBI ID   WP_003529546.1    Uniprot ID   H0G0H8
Organism   Sinorhizobium meliloti strain AK76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1652430..1662954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX10_RS15585 (JFX10_15580) - 1653329..1654132 (-) 804 WP_010969299.1 DUF72 domain-containing protein -
  JFX10_RS15590 (JFX10_15585) uvrA 1654222..1657143 (-) 2922 WP_003529545.1 excinuclease ABC subunit UvrA -
  JFX10_RS15595 (JFX10_15590) ssb 1657430..1657954 (+) 525 WP_003529546.1 single-stranded DNA-binding protein Machinery gene
  JFX10_RS15600 (JFX10_15595) - 1658020..1658649 (-) 630 WP_010969300.1 MarC family protein -
  JFX10_RS15605 (JFX10_15600) gyrA 1658935..1661730 (+) 2796 WP_014526751.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18962.68 Da        Isoelectric Point: 5.3474

>NTDB_id=519442 JFX10_RS15595 WP_003529546.1 1657430..1657954(+) (ssb) [Sinorhizobium meliloti strain AK76]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGGEGGGAGRGGSDYGGGGYEEYDQSRPSSGGARSGGQSNQPNQ
GGNFSRDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=519442 JFX10_RS15595 WP_003529546.1 1657430..1657954(+) (ssb) [Sinorhizobium meliloti strain AK76]
ATGGCTGGTAGCGTCAACAAGGTGATCTTGATCGGAAACGTCGGGGCCGACCCGGAAATCCGGCGCACGCAGGACGGCCG
GCCGATCGCCAACCTCAGAATTGCCACATCCGAGACCTGGCGCGACCGTAATTCGGGCGAGCGCCGCGAGAAGACGGAGT
GGCACACGGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAAGGCGCCAAGCTCTACATC
GAAGGCCAGCTGCAGACGCGCAAGTGGCAGGATCAGACCGGCAATGACCGCTATTCGACCGAGGTCGTCCTTCAGGGCTT
CAACTCGACCCTGACGATGCTTGACGGTCGCGGAGGCGAGGGCGGCGGCGCAGGTCGCGGCGGCAGCGACTACGGCGGTG
GCGGCTACGAGGAATACGATCAGTCGCGGCCCTCCTCGGGCGGCGCCCGGTCGGGCGGTCAATCGAACCAGCCGAACCAG
GGCGGCAACTTCTCGCGCGATCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0G0H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.511
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.489
  ssb Neisseria gonorrhoeae MS11

40.11

100

0.42
  ssb Neisseria meningitidis MC58

39.779

100

0.414