Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JEY66_RS24415 Genome accession   NZ_CP066356
Coordinates   5006213..5006704 (-) Length   163 a.a.
NCBI ID   WP_018271556.1    Uniprot ID   A0A7S7Q9Y4
Organism   Bradyrhizobium elkanii USDA 76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5001213..5011704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEY66_RS24400 (JEY66_24235) - 5001579..5002550 (+) 972 WP_018271558.1 phosphotransferase family protein -
  JEY66_RS24405 (JEY66_24240) gyrA 5002606..5005332 (-) 2727 WP_018271557.1 DNA gyrase subunit A -
  JEY66_RS24410 (JEY66_24245) - 5005557..5005954 (-) 398 Protein_4847 DUF2306 domain-containing protein -
  JEY66_RS24415 (JEY66_24250) ssb 5006213..5006704 (-) 492 WP_018271556.1 single-stranded DNA-binding protein Machinery gene
  JEY66_RS24420 (JEY66_24255) - 5007152..5007898 (+) 747 WP_018271555.1 outer membrane protein -
  JEY66_RS24425 (JEY66_24260) - 5008155..5008814 (+) 660 WP_026192744.1 outer membrane protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17528.46 Da        Isoelectric Point: 6.9872

>NTDB_id=519436 JEY66_RS24415 WP_018271556.1 5006213..5006704(-) (ssb) [Bradyrhizobium elkanii USDA 76]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKGTGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSDDAGSDFGSSGPVSSAPRRAVAAGGGSRNSDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=519436 JEY66_RS24415 WP_018271556.1 5006213..5006704(-) (ssb) [Bradyrhizobium elkanii USDA 76]
ATGGCAGGAAGCGTGAACAAGGTGATCCTGGTGGGAAATCTCGGCAAGGATCCGGAAATCCGGCGGACGCAGGACGGCCG
TCCGATCGCAAACCTTTCCATCGCCACCTCGGAAACCTGGCGCGACAAGGGCACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTGATCTTCAACGAGGGCCTCTGCAAGGTCGCCGAGCAGTATCTGAAGAAGGGCGCCAAGGTGTACATC
GAGGGTCAGCTGCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAGAAGTACTCGACCGAAGTCGTGCTGCAGGGCTT
CAACTCCAACCTCACCATGCTCGACGGGCGGGGCGGCGGAGGCGGCAGCTTCTCTGATGATGCCGGCAGCGATTTCGGCT
CGTCCGGACCGGTCAGCTCGGCGCCGCGCCGCGCCGTCGCCGCGGGTGGCGGCAGCCGCAACAGCGACATGGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7Q9Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.558
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.515
  ssb Neisseria gonorrhoeae MS11

38.122

100

0.423
  ssb Neisseria meningitidis MC58

38.547

100

0.423