Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SA40_RS08115 Genome accession   NC_022443
Coordinates   1671190..1671876 (-) Length   228 a.a.
NCBI ID   WP_000692876.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666190..1676876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS08075 (SA40_1514) rpmA 1666961..1667245 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SA40_RS08080 (SA40_1515) - 1667257..1667577 (-) 321 WP_000633690.1 ribosomal-processing cysteine protease Prp -
  SA40_RS08085 (SA40_1516) rplU 1667583..1667891 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SA40_RS08090 (SA40_1517) mreD 1668127..1668657 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SA40_RS08095 (SA40_1518) mreC 1668657..1669499 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SA40_RS08100 (SA40_1519) - 1669698..1669817 (-) 120 WP_000840603.1 hypothetical protein -
  SA40_RS08105 (SA40_1520) - 1669891..1670364 (-) 474 WP_001236737.1 DUF4930 family protein -
  SA40_RS14030 - 1670524..1670721 (+) 198 WP_000025835.1 hypothetical protein -
  SA40_RS08110 (SA40_1521) - 1670838..1671122 (-) 285 WP_000171863.1 hypothetical protein -
  SA40_RS08115 (SA40_1522) ysxA/radC 1671190..1671876 (-) 687 WP_000692876.1 DNA repair protein RadC Machinery gene
  SA40_RS08120 (SA40_1523) - 1671873..1672580 (-) 708 WP_000261111.1 A24 family peptidase -
  SA40_RS08130 (SA40_1524) - 1672848..1674119 (-) 1272 WP_001108341.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SA40_RS08135 (SA40_1525) - 1674132..1676762 (-) 2631 WP_000425338.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25297.21 Da        Isoelectric Point: 6.7572

>NTDB_id=51943 SA40_RS08115 WP_000692876.1 1671190..1671876(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus SA40]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=51943 SA40_RS08115 WP_000692876.1 1671190..1671876(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus SA40]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377