Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JEY62_RS19990 Genome accession   NZ_CP066355
Coordinates   4253390..4253884 (+) Length   164 a.a.
NCBI ID   WP_011087466.1    Uniprot ID   A0A1I3CP05
Organism   Bradyrhizobium diazoefficiens strain USDA 122-Bd     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4248390..4258884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEY62_RS19975 (JEY62_19800) - 4250279..4251031 (-) 753 WP_028171878.1 outer membrane beta-barrel protein -
  JEY62_RS19980 (JEY62_19805) - 4251255..4251926 (-) 672 WP_028171879.1 outer membrane protein -
  JEY62_RS19985 (JEY62_19810) - 4252162..4252941 (-) 780 WP_028171880.1 outer membrane beta-barrel protein -
  JEY62_RS19990 (JEY62_19815) ssb 4253390..4253884 (+) 495 WP_011087466.1 single-stranded DNA-binding protein Machinery gene
  JEY62_RS19995 (JEY62_19820) - 4254085..4254483 (+) 399 WP_028171881.1 DUF2306 domain-containing protein -
  JEY62_RS20000 (JEY62_19825) gyrA 4254651..4257383 (+) 2733 WP_028171882.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17522.49 Da        Isoelectric Point: 6.9882

>NTDB_id=519425 JEY62_RS19990 WP_011087466.1 4253390..4253884(+) (ssb) [Bradyrhizobium diazoefficiens strain USDA 122-Bd]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGGGGGSFGEEPGGDFGSSGPVSSAPRRAVAAGGGGRNSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=519425 JEY62_RS19990 WP_011087466.1 4253390..4253884(+) (ssb) [Bradyrhizobium diazoefficiens strain USDA 122-Bd]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCTGAAATCCGCCGTACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCGACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTCGTGATCTTCAATGAAGGCCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGTGCCAAGGTTTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTTGAGAAGTACTCCACCGAAGTCGTGCTCCAGGGCTT
CAACTCGACGCTCACGATGCTCGACGGCCGTGGCGGCGGGGGAGGCGGCAGCTTCGGCGAGGAGCCGGGCGGCGATTTCG
GCTCCTCCGGTCCCGTCAGCAGCGCGCCGCGCCGCGCCGTCGCCGCCGGTGGCGGTGGCCGCAACAGCGACATGGATGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I3CP05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.549
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.5
  ssb Neisseria meningitidis MC58

40.223

100

0.439
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.427