Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JEY30_RS27870 Genome accession   NZ_CP066351
Coordinates   5926890..5927390 (-) Length   166 a.a.
NCBI ID   WP_038933009.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S06B-BJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5921890..5932390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEY30_RS27860 (JEY30_27645) gyrA 5923384..5926128 (-) 2745 WP_014495110.1 DNA gyrase subunit A -
  JEY30_RS27865 (JEY30_27650) - 5926297..5926695 (-) 399 WP_038955449.1 DUF2306 domain-containing protein -
  JEY30_RS27870 (JEY30_27655) ssb 5926890..5927390 (-) 501 WP_038933009.1 single-stranded DNA-binding protein Machinery gene
  JEY30_RS27875 (JEY30_27660) - 5927842..5928609 (+) 768 WP_248888265.1 outer membrane beta-barrel protein -
  JEY30_RS27880 (JEY30_27665) - 5928843..5929532 (+) 690 WP_028153430.1 outer membrane protein -
  JEY30_RS27885 (JEY30_27670) - 5929756..5930511 (+) 756 WP_038933013.1 outer membrane beta-barrel protein -
  JEY30_RS27890 (JEY30_27675) - 5930654..5931412 (+) 759 WP_038955444.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17652.60 Da        Isoelectric Point: 6.9877

>NTDB_id=519414 JEY30_RS27870 WP_038933009.1 5926890..5927390(-) (ssb) [Bradyrhizobium japonicum strain S06B-BJ]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGSGGGGSFGDEPGGDFGSSGPVSSAPRRAVAAGGGGGRNSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=519414 JEY30_RS27870 WP_038933009.1 5926890..5927390(-) (ssb) [Bradyrhizobium japonicum strain S06B-BJ]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCCGAAATCCGCCGCACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCCACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTGGTGATCTTCAATGAAGGGCTTTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCGAAGGTTTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAGAAGTACTCCACCGAGGTCGTGCTCCAGGGCTT
CAACTCGACCCTGACGATGCTTGACGGCCGCGGTGGTAGCGGCGGAGGCGGCAGCTTCGGCGACGAGCCGGGCGGCGATT
TCGGCTCCTCCGGCCCCGTCAGCAGCGCGCCGCGCCGTGCCGTTGCCGCCGGCGGCGGCGGTGGCCGCAACAGCGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.524
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.506
  ssb Neisseria meningitidis MC58

38.462

100

0.422
  ssb Neisseria gonorrhoeae MS11

38.462

100

0.422