Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Xdur_RS15850 Genome accession   NZ_CP066343
Coordinates   3600035..3600571 (-) Length   178 a.a.
NCBI ID   WP_005913267.1    Uniprot ID   A0AAW4RIS9
Organism   Xanthomonas citri pv. durantae strain LMG696     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3595035..3605571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xdur_RS15830 (Xdur_015795) paoA 3595895..3596545 (-) 651 Protein_3097 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  Xdur_RS15835 (Xdur_015800) - 3596736..3596942 (-) 207 WP_088016288.1 hypothetical protein -
  Xdur_RS15840 (Xdur_015805) - 3596970..3597977 (-) 1008 WP_011051905.1 NAD(P)-dependent alcohol dehydrogenase -
  Xdur_RS15845 (Xdur_015810) - 3598202..3599749 (+) 1548 WP_171843845.1 sensor domain-containing diguanylate cyclase -
  Xdur_RS15850 (Xdur_015815) ssb 3600035..3600571 (-) 537 WP_005913267.1 single-stranded DNA-binding protein Machinery gene
  Xdur_RS15855 (Xdur_015820) - 3600845..3601843 (+) 999 WP_003488167.1 polyprenyl synthetase family protein -
  Xdur_RS15860 (Xdur_015825) - 3602044..3602844 (-) 801 WP_015463439.1 dienelactone hydrolase family protein -
  Xdur_RS15865 (Xdur_015830) murD 3603167..3604573 (-) 1407 WP_011051916.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18981.84 Da        Isoelectric Point: 5.3095

>NTDB_id=519397 Xdur_RS15850 WP_005913267.1 3600035..3600571(-) (ssb) [Xanthomonas citri pv. durantae strain LMG696]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGGYGGGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=519397 Xdur_RS15850 WP_005913267.1 3600035..3600571(-) (ssb) [Xanthomonas citri pv. durantae strain LMG696]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTTGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCGGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGCGGGCAGGGTGGTGGCGGATATGGCGGCGGTGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCGCCGCCAATGGACGATTTCGCAGACGACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.388

100

0.489
  ssb Glaesserella parasuis strain SC1401

44.737

100

0.478
  ssb Neisseria meningitidis MC58

44.751

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.455