Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JFU10_RS10415 Genome accession   NZ_CP066337
Coordinates   2161223..2161741 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain Mr12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2156223..2166741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS10385 - 2157424..2157804 (-) 381 WP_071392547.1 VOC family protein -
  JFU10_RS10390 - 2157860..2158798 (-) 939 WP_077723119.1 LacI family DNA-binding transcriptional regulator -
  JFU10_RS10395 xth 2158861..2159619 (-) 759 WP_077723120.1 exodeoxyribonuclease III -
  JFU10_RS10400 - 2159616..2160173 (-) 558 WP_198863436.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  JFU10_RS10405 - 2160170..2160751 (-) 582 WP_198863437.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  JFU10_RS10410 rpsR 2160940..2161179 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  JFU10_RS10415 ssbA 2161223..2161741 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  JFU10_RS10420 rpsF 2161781..2162068 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  JFU10_RS10425 ychF 2162180..2163280 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  JFU10_RS10430 - 2163407..2165410 (-) 2004 WP_101562618.1 molybdopterin-dependent oxidoreductase -
  JFU10_RS10435 - 2165457..2165663 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=519327 JFU10_RS10415 WP_004392979.1 2161223..2161741(-) (ssbA) [Bacillus velezensis strain Mr12]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=519327 JFU10_RS10415 WP_004392979.1 2161223..2161741(-) (ssbA) [Bacillus velezensis strain Mr12]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378