Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JFU10_RS07975 Genome accession   NZ_CP066337
Coordinates   1671223..1671912 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Mr12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666223..1676912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS07940 - 1666421..1666903 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JFU10_RS07945 flgM 1666918..1667184 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JFU10_RS07950 - 1667254..1667673 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  JFU10_RS07955 comFC 1667747..1668436 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  JFU10_RS07960 - 1668442..1668726 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JFU10_RS07965 comFA 1668784..1670169 (-) 1386 WP_198863912.1 DEAD/DEAH box helicase Machinery gene
  JFU10_RS07970 - 1670277..1671125 (-) 849 WP_198863913.1 DegV family protein -
  JFU10_RS07975 degU 1671223..1671912 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JFU10_RS07980 degS 1671989..1673152 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JFU10_RS07985 - 1673375..1674022 (+) 648 WP_060657503.1 YigZ family protein -
  JFU10_RS07990 - 1674027..1675241 (+) 1215 WP_070082459.1 LCP family protein -
  JFU10_RS07995 - 1675331..1676407 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=519320 JFU10_RS07975 WP_003219701.1 1671223..1671912(-) (degU) [Bacillus velezensis strain Mr12]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=519320 JFU10_RS07975 WP_003219701.1 1671223..1671912(-) (degU) [Bacillus velezensis strain Mr12]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1