Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JFU10_RS07955 Genome accession   NZ_CP066337
Coordinates   1667747..1668436 (-) Length   229 a.a.
NCBI ID   WP_198863951.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662747..1673436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS07920 fliW 1662838..1663269 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  JFU10_RS07925 - 1663299..1663868 (-) 570 WP_003151397.1 DUF6470 family protein -
  JFU10_RS07930 flgL 1663959..1664876 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JFU10_RS07935 flgK 1664888..1666405 (-) 1518 WP_198863911.1 flagellar hook-associated protein FlgK -
  JFU10_RS07940 - 1666421..1666903 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JFU10_RS07945 flgM 1666918..1667184 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JFU10_RS07950 - 1667254..1667673 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  JFU10_RS07955 comFC 1667747..1668436 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  JFU10_RS07960 - 1668442..1668726 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JFU10_RS07965 comFA 1668784..1670169 (-) 1386 WP_198863912.1 DEAD/DEAH box helicase Machinery gene
  JFU10_RS07970 - 1670277..1671125 (-) 849 WP_198863913.1 DegV family protein -
  JFU10_RS07975 degU 1671223..1671912 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JFU10_RS07980 degS 1671989..1673152 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25331.07 Da        Isoelectric Point: 8.6779

>NTDB_id=519318 JFU10_RS07955 WP_198863951.1 1667747..1668436(-) (comFC) [Bacillus velezensis strain Mr12]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARKSKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=519318 JFU10_RS07955 WP_198863951.1 1667747..1668436(-) (comFC) [Bacillus velezensis strain Mr12]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGAAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603