Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JFU10_RS07965 Genome accession   NZ_CP066337
Coordinates   1668784..1670169 (-) Length   461 a.a.
NCBI ID   WP_198863912.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663784..1675169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS07930 flgL 1663959..1664876 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JFU10_RS07935 flgK 1664888..1666405 (-) 1518 WP_198863911.1 flagellar hook-associated protein FlgK -
  JFU10_RS07940 - 1666421..1666903 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JFU10_RS07945 flgM 1666918..1667184 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JFU10_RS07950 - 1667254..1667673 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  JFU10_RS07955 comFC 1667747..1668436 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  JFU10_RS07960 - 1668442..1668726 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  JFU10_RS07965 comFA 1668784..1670169 (-) 1386 WP_198863912.1 DEAD/DEAH box helicase Machinery gene
  JFU10_RS07970 - 1670277..1671125 (-) 849 WP_198863913.1 DegV family protein -
  JFU10_RS07975 degU 1671223..1671912 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JFU10_RS07980 degS 1671989..1673152 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JFU10_RS07985 - 1673375..1674022 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52541.88 Da        Isoelectric Point: 10.0531

>NTDB_id=519319 JFU10_RS07965 WP_198863912.1 1668784..1670169(-) (comFA) [Bacillus velezensis strain Mr12]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQDLLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGSSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=519319 JFU10_RS07965 WP_198863912.1 1668784..1670169(-) (comFA) [Bacillus velezensis strain Mr12]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGACCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCAGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623