Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GKQ51_RS18955 Genome accession   NZ_CP066310
Coordinates   4013629..4014126 (-) Length   165 a.a.
NCBI ID   WP_131255356.1    Uniprot ID   A0A4R1PV77
Organism   Azotobacter chroococcum strain HR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4008629..4019126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ51_RS18930 (GKQ51_18930) - 4009281..4009955 (+) 675 WP_089169336.1 OmpW/AlkL family protein -
  GKQ51_RS18935 (GKQ51_18935) - 4010049..4010987 (-) 939 WP_131349694.1 NAD-dependent epimerase/dehydratase family protein -
  GKQ51_RS18940 (GKQ51_18940) - 4010980..4011864 (-) 885 WP_131298952.1 sugar nucleotide-binding protein -
  GKQ51_RS18945 (GKQ51_18945) - 4012286..4012948 (-) 663 Protein_3728 SDR family oxidoreductase -
  GKQ51_RS18950 (GKQ51_18950) - 4012835..4013575 (+) 741 WP_233094024.1 LysR substrate-binding domain-containing protein -
  GKQ51_RS18955 (GKQ51_18955) ssb 4013629..4014126 (-) 498 WP_131255356.1 single-stranded DNA-binding protein Machinery gene
  GKQ51_RS18960 (GKQ51_18960) - 4014136..4015524 (-) 1389 WP_089169339.1 MFS transporter -
  GKQ51_RS18965 (GKQ51_18965) uvrA 4015639..4018473 (+) 2835 WP_198866721.1 excinuclease ABC subunit UvrA -
  GKQ51_RS18970 (GKQ51_18970) rplQ 4018574..4018963 (-) 390 WP_089169341.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18405.34 Da        Isoelectric Point: 5.2852

>NTDB_id=519261 GKQ51_RS18955 WP_131255356.1 4013629..4014126(-) (ssb) [Azotobacter chroococcum strain HR1]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDAWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGGRGGNADDAPRAPRPPREPQQQAQAPQSRPAPQQDRQPPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=519261 GKQ51_RS18955 WP_131255356.1 4013629..4014126(-) (ssb) [Azotobacter chroococcum strain HR1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGGTATCTGCCCAATGGCAA
TGCGGTCACCAATATCACCCTGGCCACCACCGACGCCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGGCGTCTGCAGACCCGCAAGTGGCAGGGCCAGGATGGTCAGGACCGCTACACCACCGAAATCGTCGTCGACATGAACGG
CACCCTGCAGCTGCTCGGCGGCCGCGGCGGCAACGCCGACGATGCCCCCCGCGCGCCGCGTCCCCCGCGCGAGCCGCAGC
AGCAGGCCCAGGCTCCGCAGTCGCGTCCCGCCCCGCAGCAGGACCGGCAGCCGCCGGCGCCGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1PV77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.624
  ssb Glaesserella parasuis strain SC1401

46.995

100

0.521
  ssb Neisseria gonorrhoeae MS11

43.407

100

0.479
  ssb Neisseria meningitidis MC58

44.886

100

0.479