Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZ795_RS09395 Genome accession   NZ_CP080286
Coordinates   2025265..2025762 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain UNC_PaerCF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2020265..2030762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ795_RS09380 (KZ795_09380) bfr 2020272..2020736 (+) 465 WP_003093668.1 bacterioferritin -
  KZ795_RS09385 (KZ795_09385) uvrA 2020809..2023646 (-) 2838 WP_121347767.1 excinuclease ABC subunit UvrA Machinery gene
  KZ795_RS09390 (KZ795_09390) - 2023860..2025248 (+) 1389 WP_024917981.1 MFS transporter -
  KZ795_RS09395 (KZ795_09395) ssb 2025265..2025762 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  KZ795_RS09400 (KZ795_09400) pchA 2025849..2027279 (-) 1431 WP_033972851.1 isochorismate synthase PchA -
  KZ795_RS09405 (KZ795_09405) pchB 2027276..2027581 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  KZ795_RS09410 (KZ795_09410) pchC 2027581..2028336 (-) 756 WP_033978795.1 pyochelin biosynthesis editing thioesterase PchC -
  KZ795_RS09415 (KZ795_09415) pchD 2028333..2029976 (-) 1644 WP_219833712.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=519175 KZ795_RS09395 WP_003114685.1 2025265..2025762(+) (ssb) [Pseudomonas aeruginosa strain UNC_PaerCF12]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=519175 KZ795_RS09395 WP_003114685.1 2025265..2025762(+) (ssb) [Pseudomonas aeruginosa strain UNC_PaerCF12]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAATGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515