Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SCIM_RS09500 Genome accession   NC_018073
Coordinates   1932618..1933385 (+) Length   255 a.a.
NCBI ID   WP_003075591.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927618..1938385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS09470 (SCIM_1703) comE 1928176..1928925 (-) 750 WP_003075577.1 competence system response regulator transcription factor ComE Regulator
  SCIM_RS09475 (SCIM_1704) comD/comD1 1928925..1930250 (-) 1326 WP_014829844.1 GHKL domain-containing protein Regulator
  SCIM_RS09775 - 1930267..1930413 (-) 147 WP_003075491.1 bacteriocin -
  SCIM_RS09490 (SCIM_1705) rlmH 1930690..1931169 (-) 480 WP_003075603.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCIM_RS09495 (SCIM_1706) htrA 1931373..1932563 (+) 1191 WP_003075586.1 S1C family serine protease Regulator
  SCIM_RS09500 (SCIM_1707) spo0J 1932618..1933385 (+) 768 WP_003075591.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29660.13 Da        Isoelectric Point: 9.5403

>NTDB_id=51909 SCIM_RS09500 WP_003075591.1 1932618..1933385(+) (spo0J) [Streptococcus intermedius JTH08]
MEKYQYITLNDIQTNPYQPRKEFSEEKITELANSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
LTDDEMIKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTMGKSRPYITNSIRLLNLPSNIIEAVKEGNISQGHA
RLLINLSEKEQNHWFKKILSQELSVRKLEKQLHPKRTKTVTKNKNQLFIKEEEERLKKIFGTDISLQFSKQSQSGKICIH
FSNQEEYQRIIDSFT

Nucleotide


Download         Length: 768 bp        

>NTDB_id=51909 SCIM_RS09500 WP_003075591.1 1932618..1933385(+) (spo0J) [Streptococcus intermedius JTH08]
ATGGAAAAATATCAATACATTACACTTAATGACATACAAACCAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTACTGAACTTGCTAATTCTATAAAAGAACATGGAATTATTCAGCCCATCATTGTACGAAAATCTCCAATAATTGGTT
ATGAATTACTAGCTGGTGAAAGACGTTTTAGAGCTGCTAAATTAGCAGGTTTAACTAATATACCAGCTATTATAAAAGAA
TTAACAGATGATGAAATGATAAAGCAAGCTATCATTGAAAATTTACAAAGAGAAGACCTCAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTAATTGACAAGGGATTGACACACAAAGAAATCGCTCTAACAATGGGAAAATCTCGCCCTTACATTA
CAAATTCTATTCGTTTATTAAATTTACCATCCAATATAATTGAAGCAGTAAAAGAAGGAAATATCTCTCAAGGACATGCT
CGCCTGCTTATCAATCTCTCAGAAAAAGAGCAAAATCACTGGTTTAAAAAAATTCTATCTCAAGAACTTTCAGTTAGAAA
ACTAGAAAAACAATTGCACCCAAAACGAACAAAAACTGTAACAAAAAATAAAAATCAACTTTTTATTAAAGAAGAAGAAG
AAAGGTTAAAAAAGATATTTGGTACAGATATTTCACTCCAATTTTCCAAGCAGTCTCAATCTGGAAAAATCTGTATTCAT
TTTTCAAATCAAGAAGAATATCAAAGAATTATTGACAGCTTTACATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(146-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.953

100

0.522

Multiple sequence alignment