Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9H09_RS03425 Genome accession   NZ_CP066270
Coordinates   749537..750103 (+) Length   188 a.a.
NCBI ID   WP_024691629.1    Uniprot ID   A0AA40P2A3
Organism   Pseudomonas tremae strain PA-1-10F     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 749537..775488 749537..750103 within 0
IScluster/Tn 750344..751506 749537..750103 flank 241


Gene organization within MGE regions


Location: 749537..775488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H09_RS03425 (I9H09_03430) ssb 749537..750103 (+) 567 WP_024691629.1 single-stranded DNA-binding protein Machinery gene
  I9H09_RS03435 (I9H09_03440) - 751702..752784 (+) 1083 WP_236502635.1 site-specific integrase -
  I9H09_RS03440 (I9H09_03445) - 752777..754345 (+) 1569 WP_236502636.1 tyrosine-type recombinase/integrase -
  I9H09_RS03445 (I9H09_03450) - 754342..756324 (+) 1983 WP_248972595.1 integrase -
  I9H09_RS03450 (I9H09_03455) - 756317..756805 (+) 489 WP_236502631.1 protein kinase -
  I9H09_RS03455 (I9H09_03460) - 756931..757569 (-) 639 WP_236502632.1 hypothetical protein -
  I9H09_RS03460 (I9H09_03465) - 758122..758781 (+) 660 WP_236502633.1 hypothetical protein -
  I9H09_RS03465 (I9H09_03470) - 758778..759884 (+) 1107 WP_248972596.1 ImmA/IrrE family metallo-endopeptidase -
  I9H09_RS03470 (I9H09_03475) - 760250..760861 (-) 612 WP_236502318.1 hypothetical protein -
  I9H09_RS03475 (I9H09_03480) - 762049..763476 (+) 1428 WP_236502317.1 protein kinase -
  I9H09_RS03480 (I9H09_03485) - 763469..764626 (+) 1158 WP_236502316.1 ATP-dependent helicase -
  I9H09_RS03485 (I9H09_03490) - 764629..766023 (+) 1395 WP_236502315.1 hypothetical protein -
  I9H09_RS03490 (I9H09_03495) - 766439..767128 (+) 690 WP_236502314.1 DUF6602 domain-containing protein -
  I9H09_RS03495 (I9H09_03500) - 767834..769183 (+) 1350 WP_236502313.1 SIR2 family protein -
  I9H09_RS03500 (I9H09_03505) - 769900..770466 (-) 567 WP_236502312.1 hypothetical protein -
  I9H09_RS03505 (I9H09_03510) - 770664..770954 (+) 291 WP_236502311.1 helix-turn-helix transcriptional regulator -
  I9H09_RS03510 (I9H09_03515) - 771375..771674 (-) 300 WP_122347451.1 hypothetical protein -
  I9H09_RS03515 (I9H09_03520) - 771771..772874 (-) 1104 WP_122347452.1 endo-1,4-beta-xylanase -
  I9H09_RS03520 (I9H09_03525) - 772874..773617 (-) 744 WP_005887117.1 inositol monophosphatase family protein -
  I9H09_RS03525 (I9H09_03530) - 773614..774375 (-) 762 WP_122347453.1 glycerophosphoryl diester phosphodiesterase -
  I9H09_RS03530 (I9H09_03535) ugpC 774382..775488 (-) 1107 WP_005887123.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20931.08 Da        Isoelectric Point: 5.9404

>NTDB_id=519054 I9H09_RS03425 WP_024691629.1 749537..750103(+) (ssb) [Pseudomonas tremae strain PA-1-10F]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=519054 I9H09_RS03425 WP_024691629.1 749537..750103(+) (ssb) [Pseudomonas tremae strain PA-1-10F]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAGGTCGAAAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTATATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTAGACATGCAAGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACGCTCAACAGGGCCAGGGTGGCGGCAACTACAACCAGTCTGCACCTC
GTCCACAGCAGTCGCGCCCCCAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAACTACAACCAGCAGCCGCCACAG
CAACGCGACTCGCGTCCTGCGCCGCAACAGCAAGCGCCGCAGCCAGCTGCTGATTTCGACAGCTTTGATGACGATATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.569
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.479
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447