Detailed information NTG0519051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I9H09_RS02855
• Genome accession: NZ_CP066270
• Coordinates: 640740..641612 (-)
• Length: 290 a.a.
• NCBI ID: WP_236502297.1
• Uniprot ID: -
• Organism: Pseudomonas tremae strain PA-1-10F
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 635740..646612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9H09_RS02830 (I9H09_02835)	-	637095..638393 (-)	1299	WP_236502298.1	NAD(P)/FAD-dependent oxidoreductase	-
I9H09_RS02835 (I9H09_02840)	-	638611..639144 (-)	534	WP_005895644.1	MOSC domain-containing protein	-
I9H09_RS02840 (I9H09_02845)	-	639141..639770 (-)	630	WP_005895647.1	DUF1780 domain-containing protein	-
I9H09_RS02845 (I9H09_02850)	yacG	639914..640123 (-)	210	WP_005895648.1	DNA gyrase inhibitor YacG	-
I9H09_RS02850 (I9H09_02855)	coaE	640120..640743 (-)	624	WP_005895649.1	dephospho-CoA kinase	-
I9H09_RS02855 (I9H09_02860)	pilD	640740..641612 (-)	873	WP_236502297.1	A24 family peptidase	Machinery gene
I9H09_RS02860 (I9H09_02865)	pilC	641614..642831 (-)	1218	WP_024669673.1	type II secretion system F family protein	Machinery gene
I9H09_RS02865 (I9H09_02870)	pilB	642834..644528 (-)	1695	WP_024669672.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I9H09_RS02870 (I9H09_02875)	-	644755..645189 (+)	435	WP_024669671.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I9H09_RS02875 (I9H09_02880)	-	645490..645822 (-)	333	WP_032618469.1	helix-turn-helix domain-containing protein	-
I9H09_RS02880 (I9H09_02885)	gstA	645991..646611 (+)	621	WP_024669669.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32030.18 Da
• Isoelectric Point: 8.5797

>NTDB_id=519051 I9H09_RS02855 WP_236502297.1 640740..641612(-) (pilD) [Pseudomonas tremae strain PA-1-10F]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPTLSYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTVLLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=519051 I9H09_RS02855 WP_236502297.1 640740..641612(-) (pilD) [Pseudomonas tremae strain PA-1-10F]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCTTGGCCTTCGTCACCACCTGCTGCATTCTCGGCTTGATCATAGGAAG
CTTCCTGAACGTAGTCGTCTACCGCTTGCCAAAAATGATGGAGCGCGACTGGAAAGCACAATCCCGTGAAATGCTCGGTT
TGCCCGCAGAGCCCGACCAGCCCGTTTTCAACCTGAACCGACCCCGTTCCAGCTGCCCGCACTGCGCGCACAAGATACGC
CCGTGGGAAAACCTGCCGACCCTCAGCTACCTGTTGCTGCGTGGCAAATGCTCGCAATGCAAAGCGCCGATCAGCAAACG
CTACCCGTTGGTCGAGCTGACCTGCGCAGTTTTGTCGGCCTATGTCGCCTGGCATTTTGGCTTTGGCTGGCAGGCTGCAG
CCATGTTGGTGTTGAGCTGGGGATTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTGCCTGATTCTCTGGTG
CTGCCATTGTTGTGGTTGGGCCTGATTGTTAACGCCTTTGGGCTGTTCACATCGCTAAATGATGCGCTCTGGGGTGCTGT
GGCGGGATATCTGGCGCTGTGGTCGGTGTTTTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGATT
TCAAACTGCTGGCCATGCTTGGCGCGTGGGGCGGTTGGCAGATTCTGCCGCTGACCGTGCTGCTGTCGTCGCTGGTGGGC
GCAGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTTGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	97.586	0.531
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472