Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9H06_RS02615 Genome accession   NZ_CP066267
Coordinates   548849..549415 (+) Length   188 a.a.
NCBI ID   WP_024691629.1    Uniprot ID   A0AA40P2A3
Organism   Pseudomonas tremae strain PA-1-12B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 543849..554415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H06_RS02600 (I9H06_02615) bfr 543922..544386 (+) 465 WP_122347371.1 bacterioferritin -
  I9H06_RS02605 (I9H06_02620) uvrA 544481..547315 (-) 2835 WP_024670796.1 excinuclease ABC subunit UvrA -
  I9H06_RS02610 (I9H06_02625) - 547445..548839 (+) 1395 WP_236534472.1 MFS transporter -
  I9H06_RS02615 (I9H06_02630) ssb 548849..549415 (+) 567 WP_024691629.1 single-stranded DNA-binding protein Machinery gene
  I9H06_RS02620 (I9H06_02635) - 549560..550780 (+) 1221 WP_236534473.1 site-specific integrase -
  I9H06_RS02625 (I9H06_02640) - 550767..552278 (+) 1512 WP_236534474.1 site-specific integrase -
  I9H06_RS02630 (I9H06_02645) - 552271..554277 (+) 2007 WP_236534475.1 integrase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20931.08 Da        Isoelectric Point: 5.9404

>NTDB_id=519020 I9H06_RS02615 WP_024691629.1 548849..549415(+) (ssb) [Pseudomonas tremae strain PA-1-12B]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=519020 I9H06_RS02615 WP_024691629.1 548849..549415(+) (ssb) [Pseudomonas tremae strain PA-1-12B]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAGGTCGAAAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTATATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTAGACATGCAAGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACGCTCAACAGGGCCAGGGTGGCGGCAACTACAACCAGTCTGCACCTC
GTCCACAGCAGTCGCGCCCCCAGCAATCGGCGCCGCAGCAGTCCGCACCTCAGCAAAACTACAACCAGCAGCCGCCACAG
CAACGCGACTCGCGTCCTGCGCCGCAACAGCAAGCGCCGCAGCCAGCTGCTGATTTCGACAGCTTTGATGACGATATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.569
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.479
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447