Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9H07_RS02760 Genome accession   NZ_CP066265
Coordinates   590698..591267 (+) Length   189 a.a.
NCBI ID   WP_024646123.1    Uniprot ID   W0MR56
Organism   Pseudomonas syringae strain PA-2-9E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 585698..596267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H07_RS02745 (I9H07_02725) bfr 585772..586236 (+) 465 WP_002555461.1 bacterioferritin -
  I9H07_RS02750 (I9H07_02730) uvrA 586330..589164 (-) 2835 WP_236425061.1 excinuclease ABC subunit UvrA -
  I9H07_RS02755 (I9H07_02735) - 589294..590688 (+) 1395 WP_236425059.1 MFS transporter -
  I9H07_RS02760 (I9H07_02740) ssb 590698..591267 (+) 570 WP_024646123.1 single-stranded DNA-binding protein Machinery gene
  I9H07_RS02765 (I9H07_02745) - 591408..591707 (-) 300 WP_236425057.1 hypothetical protein -
  I9H07_RS02770 (I9H07_02750) - 591830..592573 (-) 744 WP_024646126.1 inositol monophosphatase family protein -
  I9H07_RS02775 (I9H07_02755) - 592570..593331 (-) 762 WP_024672278.1 glycerophosphoryl diester phosphodiesterase -
  I9H07_RS02780 (I9H07_02760) ugpC 593338..594444 (-) 1107 WP_058392157.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  I9H07_RS02785 (I9H07_02765) - 594441..595334 (-) 894 WP_058392156.1 ABC transporter permease subunit -
  I9H07_RS02790 (I9H07_02770) - 595331..596224 (-) 894 WP_024672281.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20988.13 Da        Isoelectric Point: 5.9404

>NTDB_id=518993 I9H07_RS02760 WP_024646123.1 590698..591267(+) (ssb) [Pseudomonas syringae strain PA-2-9E]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=518993 I9H07_RS02760 WP_024646123.1 590698..591267(+) (ssb) [Pseudomonas syringae strain PA-2-9E]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGTGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAGTCCGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAACGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTTGATAGCTTTGATGATGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MR56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.566
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.481
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444