Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9H08_RS22475 Genome accession   NZ_CP066263
Coordinates   5333067..5333618 (-) Length   183 a.a.
NCBI ID   WP_103360360.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae strain Pss9644     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5324374..5332925 5333067..5333618 flank 142


Gene organization within MGE regions


Location: 5324374..5333618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H08_RS22440 (I9H08_22370) - 5324374..5325402 (+) 1029 WP_103360321.1 reverse transcriptase family protein -
  I9H08_RS22445 (I9H08_22375) - 5325749..5327518 (-) 1770 WP_103360322.1 ATP-binding protein -
  I9H08_RS22450 (I9H08_22380) - 5327518..5328648 (-) 1131 WP_103360323.1 SIR2 family protein -
  I9H08_RS22455 (I9H08_22385) - 5329667..5330125 (-) 459 WP_146047704.1 hypothetical protein -
  I9H08_RS22460 (I9H08_22390) - 5330223..5331203 (+) 981 WP_032657254.1 IS5-like element ISPsy2 family transposase -
  I9H08_RS22465 (I9H08_22395) - 5331542..5332285 (-) 744 WP_116892688.1 hypothetical protein -
  I9H08_RS22470 (I9H08_22400) - 5332461..5332925 (-) 465 WP_236469185.1 hypothetical protein -
  I9H08_RS22475 (I9H08_22405) ssb 5333067..5333618 (-) 552 WP_103360360.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20435.54 Da        Isoelectric Point: 5.9539

>NTDB_id=518984 I9H08_RS22475 WP_103360360.1 5333067..5333618(-) (ssb) [Pseudomonas syringae pv. syringae strain Pss9644]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDSR
PAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=518984 I9H08_RS22475 WP_103360360.1 5333067..5333618(-) (ssb) [Pseudomonas syringae pv. syringae strain Pss9644]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCACGCCCACAACAGTCGGCACCGCAGCAAAACTACAACCAGCAGCCGCCACAACAGCGCGACTCGCGT
CCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.522

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.913

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.47
  ssb Neisseria meningitidis MC58

45.055

99.454

0.448