Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I9H08_RS03305 Genome accession   NZ_CP066263
Coordinates   760501..761838 (-) Length   445 a.a.
NCBI ID   WP_011266589.1    Uniprot ID   Q4ZYI2
Organism   Pseudomonas syringae pv. syringae strain Pss9644     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 755501..766838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9H08_RS03290 (I9H08_03270) - 755648..758845 (+) 3198 WP_103360182.1 PilC/PilY family type IV pilus protein -
  I9H08_RS03295 (I9H08_03275) - 758857..759258 (+) 402 WP_011266587.1 type IV pilin protein -
  I9H08_RS03300 (I9H08_03280) thiO 759285..760388 (+) 1104 WP_103360183.1 glycine oxidase ThiO -
  I9H08_RS03305 (I9H08_03285) pilR 760501..761838 (-) 1338 WP_011266589.1 sigma-54 dependent transcriptional regulator Regulator
  I9H08_RS03310 (I9H08_03290) pilS 761841..763433 (-) 1593 WP_003403505.1 ATP-binding protein Regulator
  I9H08_RS03315 (I9H08_03295) - 763423..763662 (-) 240 WP_103360184.1 PP0621 family protein -
  I9H08_RS03320 (I9H08_03300) - 763783..764805 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  I9H08_RS03325 (I9H08_03305) rluD 764955..765917 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I9H08_RS03330 (I9H08_03310) pgeF 765914..766642 (+) 729 WP_103360185.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49737.68 Da        Isoelectric Point: 6.3796

>NTDB_id=518965 I9H08_RS03305 WP_011266589.1 760501..761838(-) (pilR) [Pseudomonas syringae pv. syringae strain Pss9644]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=518965 I9H08_RS03305 WP_011266589.1 760501..761838(-) (pilR) [Pseudomonas syringae pv. syringae strain Pss9644]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCAGGCAGTGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GCGCCCACGAAGACAAGCCAGGTCTGTTTCAGGCGGCGCATACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTTGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAACAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCTGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAAAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4ZYI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375