Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SCIM_RS03785 Genome accession   NC_018073
Coordinates   787783..788586 (+) Length   267 a.a.
NCBI ID   WP_003075634.1    Uniprot ID   A0AAD1FJP4
Organism   Streptococcus intermedius JTH08     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 782783..793586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS03765 (SCIM_0673) - 783756..785069 (+) 1314 WP_003075701.1 glycosyltransferase family 4 protein -
  SCIM_RS03770 (SCIM_0674) - 785096..785437 (+) 342 WP_003075698.1 hypothetical protein -
  SCIM_RS03775 (SCIM_0675) micA 785735..786436 (+) 702 WP_003072980.1 response regulator YycF Regulator
  SCIM_RS03780 (SCIM_0676) micB 786429..787781 (+) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SCIM_RS03785 (SCIM_0677) vicX 787783..788586 (+) 804 WP_003075634.1 MBL fold metallo-hydrolase Regulator
  SCIM_RS03790 (SCIM_0678) - 788595..788954 (+) 360 WP_003072977.1 YbaN family protein -
  SCIM_RS03795 (SCIM_0679) rnc 789343..790041 (+) 699 WP_003072976.1 ribonuclease III -
  SCIM_RS03800 (SCIM_0680) smc 790032..793565 (+) 3534 WP_003075675.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29893.80 Da        Isoelectric Point: 6.0341

>NTDB_id=51869 SCIM_RS03785 WP_003075634.1 787783..788586(+) (vicX) [Streptococcus intermedius JTH08]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMETALGKIDVSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=51869 SCIM_RS03785 WP_003075634.1 787783..788586(+) (vicX) [Streptococcus intermedius JTH08]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCGTCAGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAAACAGCGCTTGGAAAGATTGATGTCAGCCAGAAGCATATTTTTGA
AATGGGAAAAACGAAAACATTTGGTGATATTGATATTGAAAGCTTTGGGGTCAGTCATGATGCGGTCGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGCGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGAATTTTGTCTGATCAAGGGCATTTGTCGAATGATGATGGTGCTGAAACTATGATTCGCACTCTTGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACGTCACCAGATACGGCGACACCTTTAACCAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.273

100

0.813

Multiple sequence alignment