Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SCIM_RS03755 Genome accession   NC_018073
Coordinates   781659..782663 (+) Length   334 a.a.
NCBI ID   WP_003075707.1    Uniprot ID   E0D497
Organism   Streptococcus intermedius JTH08     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 776659..787663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS03735 (SCIM_0667) rfbB 777046..778092 (+) 1047 WP_003075678.1 dTDP-glucose 4,6-dehydratase -
  SCIM_RS03740 (SCIM_0668) galE 778127..779146 (+) 1020 WP_003075657.1 UDP-glucose 4-epimerase GalE -
  SCIM_RS03745 - 779466..780047 (+) 582 WP_003075710.1 class I SAM-dependent methyltransferase -
  SCIM_RS03750 (SCIM_0670) - 780314..781396 (-) 1083 WP_003075664.1 M24 family metallopeptidase -
  SCIM_RS03755 (SCIM_0671) ccpA 781659..782663 (+) 1005 WP_003075707.1 catabolite control protein A Regulator
  SCIM_RS03760 (SCIM_0672) - 782756..783754 (+) 999 WP_003072984.1 glycosyltransferase family 4 protein -
  SCIM_RS03765 (SCIM_0673) - 783756..785069 (+) 1314 WP_003075701.1 glycosyltransferase family 4 protein -
  SCIM_RS03770 (SCIM_0674) - 785096..785437 (+) 342 WP_003075698.1 hypothetical protein -
  SCIM_RS03775 (SCIM_0675) micA 785735..786436 (+) 702 WP_003072980.1 response regulator YycF Regulator

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36794.84 Da        Isoelectric Point: 5.5319

>NTDB_id=51866 SCIM_RS03755 WP_003075707.1 781659..782663(+) (ccpA) [Streptococcus intermedius JTH08]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITSSYFA
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATMDAVECLAKGNRKIAFVSGPLVDDINGKIRLAGYKEALKKAKSSYSEGLVFESKYSYDDGYQLAERVIASK
ATAAFVTGDELAAGLLNGLSDKGVNVPEDFEIITSDDSQVARFTRPNLTTIGQPLYDLGAISMRMLTKIMHKEELEEREV
VLAHGLIERCSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=51866 SCIM_RS03755 WP_003075707.1 781659..782663(+) (ccpA) [Streptococcus intermedius JTH08]
ATGAACACAGACGATACTGTAACAATTTATGATGTCGCCCGTGAAGCGGGAGTTTCAATGGCGACCGTTAGCCGTGTAGT
AAACGGTAATAAAAATGTAAAGGAAAACACAAGAAAAAAAGTCTTAGAAGTCATTGACCGCCTTGACTATCGACCAAATG
CGGTAGCACGTGGACTTGCCAGCAAGAAAACGACTACAGTAGGAGTTGTCATTCCAAACATCACTAGCAGTTATTTTGCA
ACACTTGCGAAAGGAATTGATGATATTGCAGAGATGTATAAGTATAATATTGTCCTAGCTAATAGTGATGAAGATGATGA
TAAGGAAGTCTCTGTTGTTAATACGCTGTTTTCAAAGCAAGTAGATGGTATTATCTTTATGGGTTATCATCTGACAGAAA
AAATTCGTTCTGAGTTTTCTCGTTCAAGGACGCCAGTTGTACTTGCAGGAACAGTTGACGTTGAACATCAATTGCCAAGT
GTTAATATTGATTACAAACAAGCAACTATGGATGCGGTAGAATGTCTTGCAAAAGGCAACCGAAAAATTGCTTTTGTAAG
TGGACCTTTGGTAGATGATATTAATGGTAAGATTCGCTTGGCTGGCTACAAAGAAGCTTTGAAAAAAGCAAAATCTTCTT
ATAGCGAAGGGCTAGTCTTTGAGTCTAAATATAGTTATGATGATGGTTATCAATTAGCAGAACGCGTTATTGCTTCTAAA
GCAACAGCAGCTTTTGTGACTGGTGATGAGCTGGCAGCTGGACTGTTGAATGGCTTATCAGATAAAGGTGTGAATGTACC
AGAAGATTTTGAAATCATTACTAGTGACGATTCTCAGGTAGCACGTTTTACTCGCCCAAATTTGACAACTATTGGTCAGC
CTTTGTATGACCTTGGTGCAATTAGTATGCGTATGTTGACAAAGATTATGCACAAAGAAGAATTAGAAGAACGCGAAGTG
GTATTGGCACATGGTCTGATTGAGCGTTGTTCAACAAGGAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0D497

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

90.419

100

0.904
  ccpA Streptococcus pneumoniae D39

88.623

100

0.886
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.102

0.575

Multiple sequence alignment