Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JDU55_RS07665 Genome accession   NZ_CP066223
Coordinates   1615083..1615583 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain PM-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1610083..1620583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDU55_RS07650 rlmB 1610626..1611363 (+) 738 WP_005737312.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JDU55_RS07655 sodC 1611449..1612009 (-) 561 WP_005737310.1 superoxide dismutase family protein -
  JDU55_RS07660 uvrA 1612080..1614911 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  JDU55_RS07665 ssb 1615083..1615583 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  JDU55_RS07670 qatD 1616443..1617174 (-) 732 WP_005752666.1 Qat anti-phage system TatD family nuclease QatD -
  JDU55_RS07675 qatC 1617171..1618316 (-) 1146 WP_232899077.1 Qat anti-phage system QueC-like protein QatC -
  JDU55_RS11610 - 1618301..1618459 (+) 159 WP_232899079.1 hypothetical protein -
  JDU55_RS07680 - 1618487..1619227 (-) 741 WP_005752670.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=518559 JDU55_RS07665 WP_005719438.1 1615083..1615583(+) (ssb) [Pasteurella multocida strain PM-1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=518559 JDU55_RS07665 WP_005719438.1 1615083..1615583(+) (ssb) [Pasteurella multocida strain PM-1]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47