Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JD965_RS17380 Genome accession   NZ_CP066219
Coordinates   3404273..3404962 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus siamensis strain B28     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3399273..3409962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS17345 (JD965_17345) - 3399471..3399953 (-) 483 WP_045926612.1 flagellar protein FlgN -
  JD965_RS17350 (JD965_17350) flgM 3399968..3400234 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  JD965_RS17355 (JD965_17355) - 3400304..3400723 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  JD965_RS17360 (JD965_17360) comFC 3400797..3401486 (-) 690 WP_198527120.1 phosphoribosyltransferase family protein Machinery gene
  JD965_RS17365 (JD965_17365) - 3401492..3401776 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  JD965_RS17370 (JD965_17370) comFA 3401834..3403219 (-) 1386 WP_047475786.1 DEAD/DEAH box helicase Machinery gene
  JD965_RS17375 (JD965_17375) - 3403327..3404175 (-) 849 WP_047475787.1 DegV family protein -
  JD965_RS17380 (JD965_17380) degU 3404273..3404962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JD965_RS17385 (JD965_17385) degS 3405039..3406202 (-) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  JD965_RS17390 (JD965_17390) - 3406425..3407072 (+) 648 WP_047475789.1 YigZ family protein -
  JD965_RS17395 (JD965_17395) - 3407077..3408309 (+) 1233 WP_047475790.1 LCP family protein -
  JD965_RS17400 (JD965_17400) - 3408408..3409484 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=518535 JD965_RS17380 WP_003219701.1 3404273..3404962(-) (degU) [Bacillus siamensis strain B28]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=518535 JD965_RS17380 WP_003219701.1 3404273..3404962(-) (degU) [Bacillus siamensis strain B28]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGCGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTGGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGACGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1