Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JD965_RS17370 Genome accession   NZ_CP066219
Coordinates   3401834..3403219 (-) Length   461 a.a.
NCBI ID   WP_047475786.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396834..3408219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS17335 (JD965_17335) flgL 3397008..3397925 (-) 918 WP_047475782.1 flagellar hook-associated protein FlgL -
  JD965_RS17340 (JD965_17340) flgK 3397938..3399455 (-) 1518 WP_047475783.1 flagellar hook-associated protein FlgK -
  JD965_RS17345 (JD965_17345) - 3399471..3399953 (-) 483 WP_045926612.1 flagellar protein FlgN -
  JD965_RS17350 (JD965_17350) flgM 3399968..3400234 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  JD965_RS17355 (JD965_17355) - 3400304..3400723 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  JD965_RS17360 (JD965_17360) comFC 3400797..3401486 (-) 690 WP_198527120.1 phosphoribosyltransferase family protein Machinery gene
  JD965_RS17365 (JD965_17365) - 3401492..3401776 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  JD965_RS17370 (JD965_17370) comFA 3401834..3403219 (-) 1386 WP_047475786.1 DEAD/DEAH box helicase Machinery gene
  JD965_RS17375 (JD965_17375) - 3403327..3404175 (-) 849 WP_047475787.1 DegV family protein -
  JD965_RS17380 (JD965_17380) degU 3404273..3404962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JD965_RS17385 (JD965_17385) degS 3405039..3406202 (-) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  JD965_RS17390 (JD965_17390) - 3406425..3407072 (+) 648 WP_047475789.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52443.85 Da        Isoelectric Point: 10.0452

>NTDB_id=518534 JD965_RS17370 WP_047475786.1 3401834..3403219(-) (comFA) [Bacillus siamensis strain B28]
MSEDASEFSEVRDFFYGRHLLRSEIPFSDQRISPFIEKEYITAEPSVIRRKKRYVCRRCGQSEQACFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQISESSWEPVKLAWEGTLTDGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGGSEEKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKSNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPRVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=518534 JD965_RS17370 WP_047475786.1 3401834..3403219(-) (comFA) [Bacillus siamensis strain B28]
ATGTCCGAAGATGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAGTCCTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCTGTCATCCGCAGGAAAAAACGTT
ACGTCTGCCGCCGATGCGGCCAGTCTGAACAAGCCTGCTTTGCCGCATTCTGGGCCCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTCATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAATCTCAGAAAGCAG
CTGGGAGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGGCGCCCTTATAAAAGCGA
TAAAAGAGAAACAAGAGCTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCTGCTCTGTACGGCGGCAGTGAAGAAAAAGGCAGTTTAACTCCGCTAATGATTTCAA
CCGCTCATCAGCTGATGCGCTATCGGGACATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAGCAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCACTCAGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCTAGAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCACTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618
  comFA Latilactobacillus sakei subsp. sakei 23K

39.904

90.239

0.36