Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JD965_RS17360 Genome accession   NZ_CP066219
Coordinates   3400797..3401486 (-) Length   229 a.a.
NCBI ID   WP_198527120.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3395797..3406486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS17325 (JD965_17325) fliW 3395887..3396318 (-) 432 WP_047475780.1 flagellar assembly protein FliW -
  JD965_RS17330 (JD965_17330) - 3396348..3396917 (-) 570 WP_047475781.1 DUF6470 family protein -
  JD965_RS17335 (JD965_17335) flgL 3397008..3397925 (-) 918 WP_047475782.1 flagellar hook-associated protein FlgL -
  JD965_RS17340 (JD965_17340) flgK 3397938..3399455 (-) 1518 WP_047475783.1 flagellar hook-associated protein FlgK -
  JD965_RS17345 (JD965_17345) - 3399471..3399953 (-) 483 WP_045926612.1 flagellar protein FlgN -
  JD965_RS17350 (JD965_17350) flgM 3399968..3400234 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  JD965_RS17355 (JD965_17355) - 3400304..3400723 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  JD965_RS17360 (JD965_17360) comFC 3400797..3401486 (-) 690 WP_198527120.1 phosphoribosyltransferase family protein Machinery gene
  JD965_RS17365 (JD965_17365) - 3401492..3401776 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  JD965_RS17370 (JD965_17370) comFA 3401834..3403219 (-) 1386 WP_047475786.1 DEAD/DEAH box helicase Machinery gene
  JD965_RS17375 (JD965_17375) - 3403327..3404175 (-) 849 WP_047475787.1 DegV family protein -
  JD965_RS17380 (JD965_17380) degU 3404273..3404962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JD965_RS17385 (JD965_17385) degS 3405039..3406202 (-) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25415.05 Da        Isoelectric Point: 7.7717

>NTDB_id=518533 JD965_RS17360 WP_198527120.1 3400797..3401486(-) (comFC) [Bacillus siamensis strain B28]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCCLCGRSQESNEKCDDCMSRESKTEKRFLLRQNRSVY
LYNDAMKDALTRFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLVPIPLSGERLAERGFNQSELLASLLGMPVIYPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=518533 JD965_RS17360 WP_198527120.1 3400797..3401486(-) (comFC) [Bacillus siamensis strain B28]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCACTGACCTGGAGATCCCTATTTTCCCTTGCGCCGGAACAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGTCCCGTATGCTGTTTGTGCGGAAGGTCTCAAGAGTCAA
ATGAAAAATGTGATGATTGCATGTCGCGAGAATCAAAAACGGAAAAGCGCTTTTTACTGCGGCAGAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGATGCATTGACCCGGTTTAAATTTCGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTGCTGCCGGCTTTAAAGCGGCATACCCGTCAAATACACATACCCTCGTCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTACCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAAAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCTGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACTGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603