Detailed information NTG0518212

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: JC777_RS16940
• Genome accession: NZ_CP066184
• Coordinates: 3124293..3125006 (-)
• Length: 237 a.a.
• NCBI ID: WP_048722965.1
• Uniprot ID: A0AAX2CGP3
• Organism: Bacillus cytotoxicus strain SM1.1
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 3119293..3130006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC777_RS16905 (JC777_16910)	-	3119312..3119509 (-)	198	WP_048722977.1	hypothetical protein	-
JC777_RS16910 (JC777_16915)	-	3119717..3120511 (-)	795	WP_048722974.1	LysM peptidoglycan-binding domain-containing protein	-
JC777_RS16915 (JC777_16920)	abrB	3120730..3121008 (-)	279	WP_012094321.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Regulator
JC777_RS16920 (JC777_16925)	-	3121433..3121741 (-)	309	WP_140388422.1	hypothetical protein	-
JC777_RS16925 (JC777_16930)	-	3121671..3122174 (+)	504	WP_048722972.1	DUF4352 domain-containing protein	-
JC777_RS16930 (JC777_16935)	-	3122191..3122529 (+)	339	WP_087098723.1	DUF4064 domain-containing protein	-
JC777_RS16935 (JC777_16940)	-	3122886..3124292 (-)	1407	WP_048722967.1	HAMP domain-containing sensor histidine kinase	-
JC777_RS16940 (JC777_16945)	scnR	3124293..3125006 (-)	714	WP_048722965.1	response regulator transcription factor	Regulator
JC777_RS22845	-	3125107..3125310 (-)	204	WP_235436391.1	DUF1093 domain-containing protein	-
JC777_RS16950 (JC777_16955)	-	3125439..3126170 (-)	732	WP_048722963.1	ABC transporter permease	-
JC777_RS16955 (JC777_16960)	-	3126183..3126935 (-)	753	WP_048722961.1	ABC transporter permease	-
JC777_RS16960 (JC777_16965)	-	3126932..3127849 (-)	918	WP_048723104.1	ABC transporter ATP-binding protein	-
JC777_RS16965 (JC777_16970)	-	3128194..3129006 (-)	813	WP_012094306.1	MerR family transcriptional regulator	-
JC777_RS22850	-	3129405..3129788 (-)	384	WP_235436366.1	NAD(P)H-binding protein	-
JC777_RS22855	-	3129776..3129910 (-)	135	WP_235436365.1	NmrA family NAD(P)-binding protein	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 26942.45 Da
• Isoelectric Point: 6.2727

>NTDB_id=518212 JC777_RS16940 WP_048722965.1 3124293..3125006(-) (scnR) [Bacillus cytotoxicus strain SM1.1]
MGNLKDKKILIVDDEPEIRIMIERFLRKEGFFRIFSAADCTSALSLCRVDRPDIVILDVMLPDGDGFSLLSSIRQFSNMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLIAVLKRVYSSPVVERLSIFQLGKQTVDLESAVVYRGETEMPL
TAKEHAILVKLYENRGRIVTSDAICQAVWGDDSYGYENTLMVHIRRVREKIEPDPSKPIYLLTVRGLGYKLLLKETH

Nucleotide

• Length: 714 bp

>NTDB_id=518212 JC777_RS16940 WP_048722965.1 3124293..3125006(-) (scnR) [Bacillus cytotoxicus strain SM1.1]
ATGGGAAATTTAAAAGATAAAAAAATCTTAATTGTCGATGATGAACCAGAAATAAGAATCATGATTGAAAGGTTCTTAAG
AAAAGAGGGATTTTTCCGGATTTTTAGTGCTGCTGATTGTACGTCAGCTCTATCGCTTTGTCGTGTAGATCGGCCAGATA
TCGTTATTCTTGATGTTATGCTACCTGATGGTGACGGCTTTTCACTTTTATCTTCGATTAGGCAGTTCTCAAATATGCCG
GTTCTGTTTCTATCTGCACGAGGAGAAGATGAGGACCGGTTACTTGGATTAGGTTTAGGGGCAGATGATTATATTGTAAA
GCCGTTCTTACCACGTGAACTCGTATTACGTCTTATCGCTGTTTTAAAACGAGTCTATTCTTCTCCTGTTGTAGAGCGTC
TATCAATCTTTCAATTAGGGAAACAAACTGTGGACTTAGAAAGCGCTGTTGTGTATAGGGGTGAAACAGAAATGCCCTTA
ACAGCAAAAGAACATGCTATTCTTGTAAAGCTATATGAGAATCGAGGTCGAATTGTGACAAGCGACGCTATATGTCAAGC
AGTTTGGGGAGATGATAGCTACGGTTACGAAAATACATTAATGGTCCATATTAGGCGAGTACGTGAAAAAATTGAACCAG
ATCCCTCCAAACCGATTTATCTTCTTACTGTGAGGGGACTAGGGTATAAATTGCTTTTGAAGGAGACGCATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.782	96.624	0.481
vicR	Streptococcus mutans UA159	40.611	96.624	0.392
micA	Streptococcus pneumoniae Cp1015	40.351	96.203	0.388