Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JC777_RS16915 Genome accession   NZ_CP066184
Coordinates   3120730..3121008 (-) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain SM1.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115730..3126008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC777_RS16895 (JC777_16900) - 3116179..3116811 (-) 633 WP_048722981.1 type 1 glutamine amidotransferase family protein -
  JC777_RS16900 (JC777_16905) - 3117463..3119154 (+) 1692 Protein_3120 M3 family oligoendopeptidase -
  JC777_RS16905 (JC777_16910) - 3119312..3119509 (-) 198 WP_048722977.1 hypothetical protein -
  JC777_RS16910 (JC777_16915) - 3119717..3120511 (-) 795 WP_048722974.1 LysM peptidoglycan-binding domain-containing protein -
  JC777_RS16915 (JC777_16920) abrB 3120730..3121008 (-) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JC777_RS16920 (JC777_16925) - 3121433..3121741 (-) 309 WP_140388422.1 hypothetical protein -
  JC777_RS16925 (JC777_16930) - 3121671..3122174 (+) 504 WP_048722972.1 DUF4352 domain-containing protein -
  JC777_RS16930 (JC777_16935) - 3122191..3122529 (+) 339 WP_087098723.1 DUF4064 domain-containing protein -
  JC777_RS16935 (JC777_16940) - 3122886..3124292 (-) 1407 WP_048722967.1 HAMP domain-containing sensor histidine kinase -
  JC777_RS16940 (JC777_16945) scnR 3124293..3125006 (-) 714 WP_048722965.1 response regulator transcription factor Regulator
  JC777_RS22845 - 3125107..3125310 (-) 204 WP_235436391.1 DUF1093 domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=518211 JC777_RS16915 WP_012094321.1 3120730..3121008(-) (abrB) [Bacillus cytotoxicus strain SM1.1]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=518211 JC777_RS16915 WP_012094321.1 3120730..3121008(-) (abrB) [Bacillus cytotoxicus strain SM1.1]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGGGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62