Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   JDY60_RS09295 Genome accession   NZ_CP066172
Coordinates   1937228..1937851 (+) Length   207 a.a.
NCBI ID   WP_000240906.1    Uniprot ID   E9FEI1
Organism   Streptococcus oralis strain SF100     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932228..1942851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS09285 (JDY60_09285) rpoC 1932898..1936563 (+) 3666 WP_200370811.1 DNA-directed RNA polymerase subunit beta' -
  JDY60_RS09290 (JDY60_09290) ndk 1936674..1937093 (+) 420 WP_000438281.1 nucleoside-diphosphate kinase -
  JDY60_RS09295 (JDY60_09295) comM 1937228..1937851 (+) 624 WP_000240906.1 hypothetical protein Regulator
  JDY60_RS09300 (JDY60_09300) tsaE 1937935..1938378 (+) 444 WP_200370819.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JDY60_RS09305 (JDY60_09305) - 1938368..1938889 (+) 522 WP_198459179.1 GNAT family N-acetyltransferase -
  JDY60_RS09310 (JDY60_09310) brpA 1938894..1939934 (+) 1041 WP_200370821.1 biofilm formation/cell division transcriptional regulator BrpA -
  JDY60_RS09315 (JDY60_09315) cinA 1940007..1941263 (+) 1257 WP_200370822.1 competence/damage-inducible protein A Machinery gene
  JDY60_RS09320 (JDY60_09320) recA 1941318..1942469 (+) 1152 WP_001085517.1 recombinase RecA Machinery gene
  JDY60_RS09325 (JDY60_09325) - 1942639..1942833 (+) 195 WP_000415528.1 PspC domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23684.65 Da        Isoelectric Point: 9.2521

>NTDB_id=518096 JDY60_RS09295 WP_000240906.1 1937228..1937851(+) (comM) [Streptococcus oralis strain SF100]
MVKSIRLLLLIAVIQISFSSCLLWKESFLSLKQTNAYFLILIVGISVLCAGINYFHTADQSRHSILHVQKKVSLVYCLLL
VVNLLATCLVLSESIQTTSKLQQELVDLFLPSFFFLLGVDLLIFLPFDKIFRDIENHLNKKKTVVISVLATMVFLRNPIV
ISSILLYISVGFLCARFLFPKCIQREISFYGHLIRDILFVFSIVVFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=518096 JDY60_RS09295 WP_000240906.1 1937228..1937851(+) (comM) [Streptococcus oralis strain SF100]
ATGGTAAAATCAATTCGCCTATTGTTGTTGATTGCAGTCATCCAGATTAGTTTTAGTAGTTGTCTATTATGGAAAGAATC
CTTTTTATCTTTAAAACAGACCAATGCTTATTTTTTGATTTTGATAGTAGGAATTTCTGTTCTTTGTGCTGGGATAAATT
ATTTCCATACAGCAGACCAGTCTAGACATAGTATTTTACATGTTCAAAAGAAAGTGAGTCTTGTTTATTGCCTCCTTTTA
GTAGTCAATCTTCTGGCAACCTGTCTGGTTCTCTCAGAAAGCATCCAAACCACTAGCAAATTGCAGCAGGAATTGGTTGA
CCTCTTTTTACCCTCCTTCTTTTTCTTGCTAGGAGTAGATCTATTGATTTTCTTACCTTTTGATAAAATTTTTCGCGATA
TAGAAAATCACCTAAATAAAAAGAAAACAGTCGTCATTTCCGTTCTAGCTACGATGGTTTTCTTGAGGAACCCCATAGTG
ATTTCCTCGATTCTCCTTTATATCAGTGTTGGTTTTCTATGCGCACGTTTCCTTTTTCCAAAATGTATTCAAAGGGAAAT
CTCCTTTTATGGACACCTGATTCGGGATATCTTGTTTGTTTTTTCAATAGTTGTATTCTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E9FEI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

51.456

99.517

0.512
  comM Streptococcus pneumoniae R6

51.456

99.517

0.512
  comM Streptococcus pneumoniae TIGR4

51.456

99.517

0.512
  comM Streptococcus mitis NCTC 12261

40.609

95.169

0.386
  comM Streptococcus mitis SK321

40.609

95.169

0.386