Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JDY60_RS06710 Genome accession   NZ_CP066172
Coordinates   1420674..1422641 (-) Length   655 a.a.
NCBI ID   WP_200370459.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415674..1427641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06695 (JDY60_06695) cps4B 1416196..1416927 (-) 732 WP_125417736.1 capsular polysaccharide biosynthesis protein Cps4B -
  JDY60_RS06700 (JDY60_06700) - 1416929..1418374 (-) 1446 WP_000091227.1 LCP family protein -
  JDY60_RS06705 (JDY60_06705) amiA3 1418566..1420527 (-) 1962 WP_200370458.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06710 (JDY60_06710) amiA 1420674..1422641 (-) 1968 WP_200370459.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06715 (JDY60_06715) - 1422927..1423439 (-) 513 WP_200370460.1 GNAT family N-acetyltransferase -
  JDY60_RS06720 (JDY60_06720) - 1423515..1424474 (-) 960 WP_200370461.1 hypothetical protein -
  JDY60_RS06725 (JDY60_06725) - 1424767..1425732 (-) 966 WP_200370462.1 hypothetical protein -
  JDY60_RS06730 (JDY60_06730) rpsI 1425982..1426374 (-) 393 WP_000075973.1 30S ribosomal protein S9 -
  JDY60_RS06735 (JDY60_06735) rplM 1426393..1426839 (-) 447 WP_001044624.1 50S ribosomal protein L13 -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72471.98 Da        Isoelectric Point: 5.0129

>NTDB_id=518061 JDY60_RS06710 WP_200370459.1 1420674..1422641(-) (amiA) [Streptococcus oralis strain SF100]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWISDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=518061 JDY60_RS06710 WP_200370459.1 1420674..1422641(-) (amiA) [Streptococcus oralis strain SF100]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCTGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTCTGGACTATAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGACAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCCAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCCACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCAGGTATCCTAT
ATAATGGTCCTTACTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGTGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACTAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTTAACAAGAACTTCCGTCAGGCGTTAAACTTTGCCCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGGGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACTAACTCAC
TCAAGCAGTCAATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAAATG
AGCATTACGTCTCAAGCCAAGGTTCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGGCCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTTGATGCCAAGAAGGGTTCAGCCCTTAAACACTTGGGGATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGATCTTAAT
AAGCGTTATGAAAAATATGCCAAAGCTCAAGCTTGGATATCGGATAGCTCACTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTTACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTATTCA
AAGGATTGGAATTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54