Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   JDY60_RS06705 Genome accession   NZ_CP066172
Coordinates   1418566..1420527 (-) Length   653 a.a.
NCBI ID   WP_200370458.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413566..1425527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06685 (JDY60_06685) - 1414793..1415485 (-) 693 WP_061588742.1 tyrosine-protein kinase -
  JDY60_RS06690 (JDY60_06690) cpsC 1415495..1416187 (-) 693 WP_000664126.1 capsular polysaccharide biosynthesis protein CpsC -
  JDY60_RS06695 (JDY60_06695) cps4B 1416196..1416927 (-) 732 WP_125417736.1 capsular polysaccharide biosynthesis protein Cps4B -
  JDY60_RS06700 (JDY60_06700) - 1416929..1418374 (-) 1446 WP_000091227.1 LCP family protein -
  JDY60_RS06705 (JDY60_06705) amiA3 1418566..1420527 (-) 1962 WP_200370458.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06710 (JDY60_06710) amiA 1420674..1422641 (-) 1968 WP_200370459.1 peptide ABC transporter substrate-binding protein Regulator
  JDY60_RS06715 (JDY60_06715) - 1422927..1423439 (-) 513 WP_200370460.1 GNAT family N-acetyltransferase -
  JDY60_RS06720 (JDY60_06720) - 1423515..1424474 (-) 960 WP_200370461.1 hypothetical protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72996.26 Da        Isoelectric Point: 4.8329

>NTDB_id=518060 JDY60_RS06705 WP_200370458.1 1418566..1420527(-) (amiA3) [Streptococcus oralis strain SF100]
MIKLKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=518060 JDY60_RS06705 WP_200370458.1 1418566..1420527(-) (amiA3) [Streptococcus oralis strain SF100]
ATGATCAAACTGAAAAAAAGACTGATTGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTTTCGGCATGTGGGCAGTC
CAACACAGATACTAGCACTTATTCATCAACATTCAGTGCGAATCCGACAACTTTTAACTATCTTCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAACAAGGGTCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTAACCAATGACTTTTCAACTGTCGGTGTCAAA
GCCTTGGATGATTACACAGTCGAGTACACTTTGACTCGACCAGAACCGTATTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAATG
GTCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GCTTACAAGACAAGACATCATGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAC
GAACAAAAGAAATCTGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCTGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGATCCCTTCAATGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTCTTGACGCCAAGGAAGACCAAGAGC
TCATCAAGAGTTTGGGACTCGATACCTATACACAACTCTTGAAAGAAGCAGATGCAGAGAACAAAGATGTTGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACTAAAGTAACTCCGTTTACACGTGCTTACTCCTTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCTAAGGCTAAGTGGGAAGCAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.846

99.541

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.692

99.541

0.515
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508