Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6N98_RS14225 Genome accession   NZ_CP066167
Coordinates   3114004..3114525 (-) Length   173 a.a.
NCBI ID   WP_198569007.1    Uniprot ID   A0A7T4QZH1
Organism   Spongiibacter nanhainus strain csc3.9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3109004..3119525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6N98_RS14200 (I6N98_14200) fabA 3109343..3109864 (+) 522 WP_198569002.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  I6N98_RS14205 (I6N98_14205) fabB 3109955..3111175 (+) 1221 WP_198569003.1 beta-ketoacyl-ACP synthase I -
  I6N98_RS14210 (I6N98_14210) glp 3111271..3112473 (-) 1203 WP_198569004.1 gephyrin-like molybdotransferase Glp -
  I6N98_RS14215 (I6N98_14215) moaB 3112466..3112999 (-) 534 WP_198569005.1 molybdenum cofactor biosynthesis protein B -
  I6N98_RS14220 (I6N98_14220) - 3112996..3113832 (-) 837 WP_198569006.1 sugar nucleotide-binding protein -
  I6N98_RS14225 (I6N98_14225) ssb 3114004..3114525 (-) 522 WP_198569007.1 single-stranded DNA-binding protein Machinery gene
  I6N98_RS14230 (I6N98_14230) - 3114631..3115980 (-) 1350 WP_198569008.1 MFS transporter -
  I6N98_RS14235 (I6N98_14235) uvrA 3116144..3118996 (+) 2853 WP_198569009.1 excinuclease ABC subunit UvrA -
  I6N98_RS14240 (I6N98_14240) rplQ 3119100..3119492 (-) 393 WP_198569010.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18764.55 Da        Isoelectric Point: 5.2615

>NTDB_id=517944 I6N98_RS14225 WP_198569007.1 3114004..3114525(-) (ssb) [Spongiibacter nanhainus strain csc3.9]
MARGINKVILIGNLGQDPETRYMPSGSAVTNVTLATSESWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVANEMQMLDGRGGSSGGSSGGYGDYNQSAPQRPQSAPSRPAQNPAPQNQAPQGQGAPAP
GGFDDGFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=517944 I6N98_RS14225 WP_198569007.1 3114004..3114525(-) (ssb) [Spongiibacter nanhainus strain csc3.9]
ATGGCGCGTGGCATCAACAAGGTGATTTTGATCGGCAATCTGGGCCAGGACCCGGAAACCCGCTATATGCCCTCAGGGTC
AGCGGTGACCAATGTTACCCTTGCCACCAGCGAAAGTTGGAAGGACAAGCAAACCGGGCAGCCCCAAGAGCGTACCGAGT
GGCACCGGGTGGTGTTTTTTAACCGCCTGGCGGAAATCGCAGGCGAATATCTAAAGAAAGGCTCCAAGGTCTATGTCGAG
GGTTCACTGCGGACCCGCAAGTGGCAAGGTCAGGATGGCCAGGATCGCTACACCACAGAAATCGTCGCCAACGAGATGCA
AATGCTCGATGGTCGTGGCGGCAGCAGTGGCGGCAGCAGTGGCGGCTATGGCGACTACAATCAGTCCGCCCCGCAGCGTC
CCCAATCTGCTCCTTCGCGGCCGGCGCAAAACCCGGCTCCTCAAAACCAGGCTCCGCAGGGCCAGGGCGCGCCAGCTCCC
GGCGGCTTTGACGACGGTTTTGACGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4QZH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.578
  ssb Vibrio cholerae strain A1552

55.932

100

0.572
  ssb Neisseria meningitidis MC58

53.073

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.073

100

0.549