Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ITG10_RS14425 Genome accession   NZ_CP066149
Coordinates   3200784..3201365 (+) Length   193 a.a.
NCBI ID   WP_017630377.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195784..3206365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS14405 (ITG10_14305) panP 3196098..3197741 (-) 1644 WP_017630381.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ITG10_RS14410 (ITG10_14310) - 3197860..3198387 (-) 528 WP_017630380.1 hypothetical protein -
  ITG10_RS14415 (ITG10_14315) - 3198562..3199467 (-) 906 WP_026084192.1 lysine exporter LysO family protein -
  ITG10_RS14420 (ITG10_14320) - 3199506..3200426 (-) 921 WP_017630378.1 HDOD domain-containing protein -
  ITG10_RS14425 (ITG10_14325) tfoX 3200784..3201365 (+) 582 WP_017630377.1 TfoX/Sxy family DNA transformation protein Regulator
  ITG10_RS14430 (ITG10_14330) - 3201512..3202054 (-) 543 WP_017630376.1 hypothetical protein -
  ITG10_RS14435 (ITG10_14335) - 3202352..3202849 (-) 498 WP_017630375.1 response regulator -
  ITG10_RS14440 (ITG10_14340) - 3202842..3204785 (-) 1944 WP_017630374.1 ATP-binding protein -
  ITG10_RS14445 (ITG10_14345) - 3204969..3206231 (+) 1263 WP_017630373.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22301.75 Da        Isoelectric Point: 9.6041

>NTDB_id=517892 ITG10_RS14425 WP_017630377.1 3200784..3201365(+) (tfoX) [Vibrio sp. ED004]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGRKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=517892 ITG10_RS14425 WP_017630377.1 3200784..3201365(+) (tfoX) [Vibrio sp. ED004]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTCGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATTAGAGGTAGAAAGTCATTAGATAAAAAAC
TGACCGATCTTGATTGTGAAAAGTATCGTCATGTGAAAAAACAGACAACAGCAACCGTAAATTACTACGATATTACTGAC
CTGTTTACATGCGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGCAGCTTCAA
GAAATCATCAGCAAGCCGTAGATTAAGAGATCTACCAAACATGCAGCTTACACTAGAGCGCATGGTTAAGAAGGCTGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTATGGAAACGATGTT
GACCTAAAGCTACTTTGGAAATTTGCGGGCGCGATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

69.948

100

0.699
  tfoX Vibrio parahaemolyticus RIMD 2210633

69.948

100

0.699
  tfoX Aliivibrio fischeri ES114

57.368

98.446

0.565