Detailed information NTG0517864

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ITG10_RS04960
• Genome accession: NZ_CP066149
• Coordinates: 1162598..1163467 (+)
• Length: 289 a.a.
• NCBI ID: WP_017629807.1
• Uniprot ID: -
• Organism: Vibrio sp. ED004
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1157598..1168467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG10_RS04940 (ITG10_04875)	nadC	1157999..1158889 (+)	891	WP_017629811.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ITG10_RS04945 (ITG10_04880)	-	1159145..1159600 (+)	456	WP_017629810.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ITG10_RS04950 (ITG10_04885)	pilB	1159600..1161285 (+)	1686	WP_248386737.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ITG10_RS04955 (ITG10_04890)	pilC	1161301..1162530 (+)	1230	WP_017629808.1	type II secretion system F family protein	Machinery gene
ITG10_RS04960 (ITG10_04895)	pilD	1162598..1163467 (+)	870	WP_017629807.1	A24 family peptidase	Machinery gene
ITG10_RS04965 (ITG10_04900)	coaE	1163470..1164084 (+)	615	WP_017629806.1	dephospho-CoA kinase	-
ITG10_RS04970 (ITG10_04905)	zapD	1164111..1164851 (+)	741	WP_017629805.1	cell division protein ZapD	-
ITG10_RS04975 (ITG10_04910)	yacG	1164932..1165129 (+)	198	WP_017106879.1	DNA gyrase inhibitor YacG	-
ITG10_RS04980 (ITG10_04915)	-	1165379..1166397 (+)	1019	Protein_981	IS110 family transposase	-
ITG10_RS04985	-	1167102..1167494 (-)	393	WP_348983555.1	transposase	-
ITG10_RS04990	-	1167428..1167889 (-)	462	WP_248386639.1	transposase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.76 Da
• Isoelectric Point: 6.9291

>NTDB_id=517864 ITG10_RS04960 WP_017629807.1 1162598..1163467(+) (pilD) [Vibrio sp. ED004]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLNIPRSTCPKCETQLRII
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFGFYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYLTSVLGM

Nucleotide

• Length: 870 bp

>NTDB_id=517864 ITG10_RS04960 WP_017629807.1 1162598..1163467(+) (pilD) [Vibrio sp. ED004]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATTGGCAGCTTCCTCAA
CGTCGTCATACACCGCTTACCGATTATGATGGAACGTGAATGGCAACAAGAGTGCTCAGAGTATTTCTCTCAATACAAAA
TCCCGGCACCTGAAGGGAAGTTTAACCTGAACATTCCACGTTCGACTTGTCCGAAATGTGAAACCCAATTAAGAATCATC
GACAATATTCCAGTGCTAAGCTGGTTGTTCTTAAAGGGCAAATGCCACAGTTGCGCGAATCCTATCAGTGCTCGCTACCC
TTTGGTTGAACTGCTTACTGCAATCCTTTGTACTGTAGTCGCTAGCCACTTTGGTTTTGGTTTCTACGCTATTGCGCTGA
TCTTTTTCACCTTCGCACTGATTACAGCGACCTTTATCGATCTCGACACCATGCTACTGCCTGATCAAATCACCTTACCT
TTGGTTTGGTCCGGTATCGCTTTAGCACTGTTTAATATCAGCCCAGTATCGCTTCAAGACTCTGTGGTTGGCGCTATGGC
AGGCTACCTAGCTTTATGGTCAGTTTACTGGTTGTTTAAGCTGCTGACAGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AGTTACTGGCGGCACTTGGTGCATGGCTGGGTTGGCAGCATCTACCGATGATCATCCTTTTATCGTCACTTGTTGGTTTG
GTTTTCGGTTTGATTCAGCTGCGCTTGAAACAGCAAGGCATAGATAAAGCCTTCCCATTTGGGCCTTATCTTGCCATTGC
AGGTTGGGTTAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTAACTTCTGTACTAGGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.01	100	0.73
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter baumannii D1279779	51.685	92.388	0.478
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443