Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A458_RS39715 Genome accession   NC_018028
Coordinates   3860224..3860718 (-) Length   164 a.a.
NCBI ID   WP_003304048.1    Uniprot ID   I4CXK5
Organism   Stutzerimonas stutzeri CCUG 29243     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3827256..3861037 3860224..3860718 within 0


Gene organization within MGE regions


Location: 3827256..3861037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A458_RS44155 (A458_17780) - 3827375..3827881 (+) 507 WP_014821593.1 hypothetical protein -
  A458_RS39565 (A458_17785) - 3828719..3829423 (+) 705 WP_014821594.1 hypothetical protein -
  A458_RS39570 (A458_17790) - 3829902..3831272 (-) 1371 WP_014818820.1 IS1182 family transposase -
  A458_RS39575 (A458_17795) - 3831734..3832789 (+) 1056 WP_014821595.1 alpha/beta hydrolase -
  A458_RS39580 (A458_17800) - 3832879..3833370 (+) 492 WP_014821596.1 cupin domain-containing protein -
  A458_RS39585 (A458_17805) - 3833348..3834142 (+) 795 WP_014821597.1 carboxymuconolactone decarboxylase family protein -
  A458_RS39590 (A458_17810) - 3834181..3835056 (+) 876 WP_014821598.1 aldo/keto reductase -
  A458_RS39595 (A458_17815) - 3835262..3836263 (+) 1002 WP_014821599.1 aldo/keto reductase -
  A458_RS39600 (A458_17820) - 3836260..3837159 (-) 900 WP_014821600.1 LysR family transcriptional regulator -
  A458_RS39605 (A458_17825) - 3837317..3837949 (+) 633 WP_014821601.1 flavodoxin family protein -
  A458_RS39610 (A458_17830) - 3837967..3839412 (-) 1446 WP_014821602.1 MFS transporter -
  A458_RS39615 (A458_17835) - 3839716..3840666 (-) 951 WP_014821603.1 XdhC family protein -
  A458_RS39620 (A458_17840) paoA 3841140..3841799 (+) 660 WP_014821604.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  A458_RS39625 (A458_17845) - 3841796..3842746 (+) 951 WP_014821605.1 FAD binding domain-containing protein -
  A458_RS39630 (A458_17850) paoC 3842750..3844957 (+) 2208 WP_014821606.1 aldehyde oxidoreductase molybdenum-binding subunit PaoC -
  A458_RS39635 (A458_17855) - 3845324..3846313 (+) 990 WP_014821607.1 aldo/keto reductase -
  A458_RS39640 (A458_17860) - 3846748..3847668 (+) 921 WP_014821608.1 SDR family oxidoreductase -
  A458_RS39645 (A458_17865) umuC 3847789..3849069 (-) 1281 WP_014821609.1 translesion error-prone DNA polymerase V subunit UmuC -
  A458_RS39650 (A458_17870) - 3849056..3849487 (-) 432 WP_011914412.1 LexA family protein -
  A458_RS39655 (A458_17875) - 3849570..3850283 (+) 714 WP_014821610.1 SOS response-associated peptidase family protein -
  A458_RS39660 (A458_17880) - 3850362..3850676 (-) 315 WP_014821611.1 hypothetical protein -
  A458_RS39665 (A458_17885) - 3850888..3851247 (+) 360 WP_014821612.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  A458_RS39670 (A458_17890) - 3851436..3852173 (+) 738 WP_014821613.1 metallophosphoesterase -
  A458_RS39675 (A458_17895) - 3852283..3853674 (-) 1392 WP_041754600.1 DEAD/DEAH box helicase -
  A458_RS39680 (A458_17900) - 3853671..3854261 (-) 591 WP_014821615.1 hypothetical protein -
  A458_RS39685 (A458_17905) - 3854366..3854593 (+) 228 WP_014821616.1 helix-turn-helix domain-containing protein -
  A458_RS39690 (A458_17910) - 3854590..3854808 (-) 219 WP_014821617.1 BPSL0761 family protein -
  A458_RS39695 (A458_17915) - 3854921..3855334 (-) 414 WP_031297795.1 hypothetical protein -
  A458_RS39700 (A458_17920) - 3855337..3857331 (-) 1995 WP_014821619.1 integrase -
  A458_RS39705 (A458_17925) - 3857324..3858874 (-) 1551 WP_014821620.1 site-specific integrase -
  A458_RS44590 (A458_17930) - 3858867..3860081 (-) 1215 WP_014821621.1 tyrosine-type recombinase/integrase -
  A458_RS39715 (A458_17935) ssb 3860224..3860718 (-) 495 WP_003304048.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18416.48 Da        Isoelectric Point: 5.9492

>NTDB_id=51774 A458_RS39715 WP_003304048.1 3860224..3860718(-) (ssb) [Stutzerimonas stutzeri CCUG 29243]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQARPQQREPQQAPRQQAQPQQPAARQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=51774 A458_RS39715 WP_003304048.1 3860224..3860718(-) (ssb) [Stutzerimonas stutzeri CCUG 29243]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGATAGCTGGAAGGACAAGCAGACCGGCCAGCTTCAGGAGCGTACCGAGT
GGCATCGCGTGGTGTTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGCTCGCAATGCTACATCGAG
GGACGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAAATAGTCGTCGACATGAACGGCAC
CATGCAGCTGCTCGGTGGCCGTGGCGGCAGTTCCGACGATGCCCCGCGTCAGGCCCGCCCGCAGCAGCGTGAGCCGCAGC
AGGCGCCGCGTCAGCAGGCCCAGCCGCAGCAGCCCGCTGCGCGGCAGCAGCCGGCACCGGACTACGACAGCTTCGACGAC
GACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4CXK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.955

100

0.622
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.506
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.506
  ssb Neisseria meningitidis MC58

46.591

100

0.5

Multiple sequence alignment