Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JA116_RS01690 Genome accession   NZ_CP066127
Coordinates   385070..385591 (+) Length   173 a.a.
NCBI ID   WP_046892742.1    Uniprot ID   A0A9Q4CTE7
Organism   Morganella morganii strain FAM24685     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380070..390591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JA116_RS01675 (JA116_01675) - 380313..381509 (+) 1197 WP_107680346.1 amino acid aminotransferase -
  JA116_RS01680 (JA116_01680) - 381561..381827 (-) 267 WP_107680347.1 DksA/TraR family C4-type zinc finger protein -
  JA116_RS01685 (JA116_01685) uvrA 381959..384793 (-) 2835 WP_107680348.1 excinuclease ABC subunit UvrA -
  JA116_RS01690 (JA116_01690) ssb 385070..385591 (+) 522 WP_046892742.1 single-stranded DNA-binding protein Machinery gene
  JA116_RS01695 (JA116_01695) - 385660..386589 (-) 930 WP_107680349.1 histone deacetylase -
  JA116_RS01700 (JA116_01700) - 386586..387053 (-) 468 WP_107680350.1 hypothetical protein -
  JA116_RS01705 (JA116_01705) ilvB 388390..390081 (+) 1692 WP_107680351.1 acetolactate synthase large subunit -
  JA116_RS01710 (JA116_01710) ilvN 390099..390383 (+) 285 WP_004238249.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18710.71 Da        Isoelectric Point: 4.9567

>NTDB_id=517662 JA116_RS01690 WP_046892742.1 385070..385591(+) (ssb) [Morganella morganii strain FAM24685]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNIGGSMQMLGGRSGGGDNASQGGGWGQPQQPQQSQQFSGGGNPRPAQQPAAAAPQS
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=517662 JA116_RS01690 WP_046892742.1 385070..385591(+) (ssb) [Morganella morganii strain FAM24685]
ATGGCCAGCAGAGGCGTCAACAAAGTCATTCTTATCGGGAACCTGGGTCAGGATCCGGAAGTGCGTTACATGCCTAACGG
CGGTGCGGTTACCAACATCACACTGGCGACATCAGAATCATGGCGTGATAAACAAACCGGCGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTGATCTTCGGCAAACTGGCAGAAATTGCCGGTGAATATCTGAAAAAAGGTTCACAGGTTTATATC
GAAGGCTCACTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAACGCTACACCACGGAAGTCGTGGTCAATATCGG
CGGCAGCATGCAGATGCTGGGCGGCCGCAGCGGTGGCGGTGATAATGCATCACAGGGCGGTGGCTGGGGACAACCACAGC
AGCCGCAACAATCCCAGCAGTTCAGCGGCGGCGGTAACCCGCGCCCGGCACAACAACCGGCAGCAGCTGCACCGCAAAGC
AATGAACCGCCGATGGATTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.73

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.613
  ssb Neisseria meningitidis MC58

49.432

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.432

100

0.503