NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JC622_RS20915	Genome accession	NZ_CP066125
Coordinates	4469695..4470567 (+)	Length	290 a.a.
NCBI ID	WP_227095388.1	Uniprot ID	-
Organism	Aeromonas veronii strain 32286
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4464695..4475567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC622_RS20895	nadC	4464804..4465679 (+)	876	WP_227095386.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JC622_RS20900	-	4466012..4466443 (+)	432	WP_227096674.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JC622_RS20905	pilB	4466450..4468156 (+)	1707	WP_227095387.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
JC622_RS20910	pilC	4468393..4469634 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
JC622_RS20915	pilD	4469695..4470567 (+)	873	WP_227095388.1	A24 family peptidase	Machinery gene
JC622_RS20920	coaE	4470581..4471195 (+)	615	WP_227095389.1	dephospho-CoA kinase	-
JC622_RS20925	zapD	4471233..4471955 (+)	723	WP_005355104.1	cell division protein ZapD	-
JC622_RS20930	yacG	4471965..4472159 (+)	195	WP_201908670.1	DNA gyrase inhibitor YacG	-
JC622_RS20935	mutT	4472237..4472641 (-)	405	WP_227095390.1	8-oxo-dGTP diphosphatase MutT	-
JC622_RS20940	secA	4472716..4475436 (-)	2721	WP_150389839.1	preprotein translocase subunit SecA	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32126.41 Da Isoelectric Point: 6.7414

                                >NTDB_id=517624 JC622_RS20915 WP_227095388.1 4469695..4470567(+) (pilD) [Aeromonas veronii strain 32286]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=517624 JC622_RS20915 WP_227095388.1 4469695..4470567(+) (pilD) [Aeromonas veronii strain 32286]

ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG

CAGCTTCCTCAACGTAGTGATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT

CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC

ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC

GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGGA

CGCTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTTACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG

CTCACCTTGCCACTTCTGTGGGGCGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCAGTGATCGG

TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATTATTTTGCTACTCTCATCCCTG

GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT

CGCCATCGCCGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	56.446	98.966	0.559
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455

Detailed information NTG0517624