Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JC624_RS01005 Genome accession   NZ_CP066124
Coordinates   221946..222533 (+) Length   195 a.a.
NCBI ID   WP_068564499.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 216946..227533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS00980 - 217022..217822 (-) 801 WP_227062551.1 SDR family NAD(P)-dependent oxidoreductase -
  JC624_RS00985 - 217926..218297 (-) 372 WP_068564506.1 MerR family transcriptional regulator -
  JC624_RS00990 tenA 218364..219038 (-) 675 WP_227062553.1 thiaminase II -
  JC624_RS00995 - 219301..220383 (+) 1083 WP_068564502.1 DUF475 domain-containing protein -
  JC624_RS01000 yajR 220530..221894 (+) 1365 WP_005066887.1 MFS transporter -
  JC624_RS01005 ssb 221946..222533 (+) 588 WP_068564499.1 single-stranded DNA-binding protein Machinery gene
  JC624_RS01010 - 222574..222897 (-) 324 WP_227062554.1 AzlD domain-containing protein -
  JC624_RS01015 - 222894..223589 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  JC624_RS01020 ydcN 223658..224206 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  JC624_RS01025 - 224261..224704 (-) 444 WP_068564497.1 MarR family winged helix-turn-helix transcriptional regulator -
  JC624_RS01030 - 224976..225383 (-) 408 WP_068564495.1 EVE domain-containing protein -
  JC624_RS01035 - 225388..225840 (-) 453 WP_063097717.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21253.03 Da        Isoelectric Point: 6.4822

>NTDB_id=517562 JC624_RS01005 WP_068564499.1 221946..222533(+) (ssb) [Acinetobacter pittii strain 32292]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGSGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=517562 JC624_RS01005 WP_068564499.1 221946..222533(+) (ssb) [Acinetobacter pittii strain 32292]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTAGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

42.857

100

0.446
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385