Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9018_RS28955 Genome accession   NZ_CP066123
Coordinates   6307085..6307591 (-) Length   168 a.a.
NCBI ID   WP_022641321.1    Uniprot ID   A0A7X1KFV7
Organism   Pseudomonas sp. MPFS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6302085..6312591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9018_RS28940 (I9018_28845) - 6303105..6304925 (+) 1821 WP_124347261.1 hypothetical protein -
  I9018_RS28945 (I9018_28850) - 6304940..6305992 (+) 1053 WP_241108133.1 hypothetical protein -
  I9018_RS28950 (I9018_28855) - 6306083..6306838 (-) 756 WP_241108134.1 MFS transporter -
  I9018_RS28955 (I9018_28860) ssb 6307085..6307591 (-) 507 WP_022641321.1 single-stranded DNA-binding protein Machinery gene
  I9018_RS28960 (I9018_28865) - 6307601..6308995 (-) 1395 WP_241108135.1 MFS transporter -
  I9018_RS28965 (I9018_28870) uvrA 6309173..6312007 (+) 2835 WP_068577541.1 excinuclease ABC subunit UvrA -
  I9018_RS28970 (I9018_28875) bfr 6312097..6312561 (-) 465 WP_022641324.1 bacterioferritin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18768.91 Da        Isoelectric Point: 5.9314

>NTDB_id=517554 I9018_RS28955 WP_022641321.1 6307085..6307591(-) (ssb) [Pseudomonas sp. MPFS]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPRQQAPRPQQAPQRPAPQQPAPQPAPDFD
SFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=517554 I9018_RS28955 WP_022641321.1 6307085..6307591(-) (ssb) [Pseudomonas sp. MPFS]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCGGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTTTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGGTCCCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGTCCCCAACAGGGCGACCAACAGGGCGGCGGCAACAACTACCAGCAGTCCGCACCTCGCC
AGCAGGCGCCACGCCCGCAACAGGCTCCACAGCGTCCAGCGCCACAACAGCCTGCGCCGCAGCCGGCACCGGACTTCGAC
AGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1KFV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.619
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.53
  ssb Neisseria gonorrhoeae MS11

49.438

100

0.524
  ssb Neisseria meningitidis MC58

48.876

100

0.518