Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECOPMV1_RS09650 Genome accession   NC_022370
Coordinates   2923440..2924177 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli PMV-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2918440..2929177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOPMV1_RS09665 (ECOPMV1_02823) clpC 2918894..2921467 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  ECOPMV1_RS09660 (ECOPMV1_02824) yfiH 2921597..2922328 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  ECOPMV1_RS09655 (ECOPMV1_02825) rluD 2922325..2923305 (-) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECOPMV1_RS09650 (ECOPMV1_02826) comL 2923440..2924177 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECOPMV1_RS09645 (ECOPMV1_02827) raiA 2924447..2924788 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECOPMV1_RS29410 pheL 2924892..2924939 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECOPMV1_RS09640 (ECOPMV1_02829) pheA 2925038..2926198 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECOPMV1_RS09635 (ECOPMV1_02830) tyrA 2926241..2927362 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECOPMV1_RS09630 (ECOPMV1_02831) aroF 2927373..2928443 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECOPMV1_RS09625 (ECOPMV1_02832) yfiL 2928653..2929018 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=51752 ECOPMV1_RS09650 WP_000197686.1 2923440..2924177(+) (comL) [Escherichia coli PMV-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=51752 ECOPMV1_RS09650 WP_000197686.1 2923440..2924177(+) (comL) [Escherichia coli PMV-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment